Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6128g00008 ATGGCGGCATCCGCCACCGCCTCCGGCGGTGTGTTGACGGATCTAACTCACCGAACCCCCTTTCTCGGTCTCAAACTCTACGCCCTGATCCTCATTCTAGTTATAATGGTGGTGGCAGCAGTGCTCCTGATCCTCCTCTGCTTCCGCCGGAGCTCGAAGAAGCGGAAAATGCGAGTGAAGCACAGCTCCGGCGCGATCCCGCTGGTATCGAAGGAGATCCTGGAAGTGAATACTCTGGAACTGAAAATCGAAGAGGCGGATGAGGAGGATCCGAAGAAGGAGGAGATGAAGCTTGAAGATAGTCCGTCGGTGGAGTCACCGAACATAGGGTGGGGACGCTGGTATAGCCTCAGTGAGCTTGAGGCTGCGACGCAAGGGTTCGCCGAAGGGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTATAGAGGAAATTTGCTCGACGGTTCTGTCGTCGCGGTCAAAAATCTTCTCAACAACAAGGGGCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCACAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGACGTAGGACCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGGACTGCGAAAGGGCTAGCCTACTTGCACGAAGGATTAGAACCCAAAGTTGTCCATCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGCCTGAGAAAAGCTACGTGACAACGCGTGTAATGGGGACATTTGGATATGTGTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAAGGCAGCGATGTGTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGGAGGAGTCCGATCGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAAGGAATGGTTGCAAATCGTCTTGGTGAAGAACTAGTTGATCCTTTAATAGATATTCAACCCTCTCAAAGATCTTTGAAACGAGCTTTACTTGTTTGTCTGCGCTGTATAGATTTGGATGTCAGTAAGCGACCAAAGATGGGCCAAATTGTTCACATGCTTGAGGCTGACGATTTTCCCTTTCGTTCTGAACATCGAACAAACAGAGAGAAAGATCCTGTTTATTCTAAAGCAGCTGGTTCCAGCAAGATTCCATATCCAACAAGGCATGTAGAACCAGTAGATAAATCAAACTGGAGATGA 1335 0.4727 MAASATASGGVLTDLTHRTPFLGLKLYALILILVIMVVAAVLLILLCFRRSSKKRKMRVKHSSGAIPLVSKEILEVNTLELKIEEADEEDPKKEEMKLEDSPSVESPNIGWGRWYSLSELEAATQGFAEGNVIGEGGYGIVYRGNLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGPEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVANRLGEELVDPLIDIQPSQRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSEHRTNREKDPVYSKAAGSSKIPYPTRHVEPVDKSNWR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6128g00008 444 SUPERFAMILY Protein kinase-like (PK-like) 106 399 IPR011009 -
Vium6128g00008 444 CDD STKc_IRAK 133 399 - -
Vium6128g00008 444 MobiDBLite consensus disorder prediction 407 444 - -
Vium6128g00008 444 FunFam Putative receptor-like serine/threonine-protein kinase 203 413 - -
Vium6128g00008 444 Gene3D Transferase(Phosphotransferase) domain 1 203 415 - -
Vium6128g00008 444 ProSiteProfiles Protein kinase domain profile. 127 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6128g00008 444 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Vium6128g00008 444 Pfam Protein kinase domain 129 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6128g00008 444 PANTHER OS01G0323000 PROTEIN 13 417 - -
Vium6128g00008 444 Coils Coil 69 89 - -
Vium6128g00008 444 FunFam Probable serine/threonine-protein kinase At1g01540 107 202 - -
Vium6128g00008 444 Gene3D Phosphorylase Kinase; domain 1 87 202 - -
Vium6128g00008 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vium6128g00008 444 SMART serkin_6 127 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6128g00008 Vium-Chr6128 52248 55647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6128g00008 62 399 Receptor kinase-like Gene Family AT4G02010 45.402 1.95e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium6128g00008 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6128g00008 - - vra:106762137 763.066