Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6128g00007 ATGGGGATAGTGTGGTTCCGGTTGTTGTTGTTGCTGGTGGTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCTCTGAGGAGCGAGAATCGTTACTTGAACTGAGGGCTTCTCTGGGGTTGAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGTTTACTCTGGGTTGGCATCACATGCCAGAATGGTCGAGTCGTTGGGATCAGTATCTCTGGGTTTAAAAGAACAAGACTTGGGAGGGGGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCCTCTAATTTCCTCCTTCCTGGACCTATTCCCGATTGGTTTGGTCTCTCCCTTCCTTCTCTCAGAGTGCTTGATCTTCGTTCTTGTTCCATTGTGAATGCTATTCCCTCCACTCTCGGCAATTTGACCAACCTCTCTAGTCTCTATCTTTCTGACAACAACCTCATTGGGAATGTTCCGGAGTCTCTGGGTCAACTCTCTGCCCTTGCGGTTCTTGATCTTTCCAGGAATTCTCTCGCTGGCTCCATACCAACATCTTTTGGCTTTCTTGGGAATCTTTCTTCCCTTGACATGTCTGCCAATTTTTTGTCGGGGCCGATTCCCCCTGAAATAGGGTCTCTTTCCAGGTTACAGTACTTGAATCTTTCCAACAACGGACTTGCCACTTTGCCTAGTCAATTGGGGGGTCTAACTAGCTTAGTTGTCCTTGATCTTAGTCAGAATTCTTTTGCCAGTGGAGGACTGCCTCAGGATTTGGTTGGGTTTAGGAACTTGCGGCAGATGATACTCACAAACAGCATGCTCACGGGGGCCCTGCCCGGCAGATTGTTTACTGATTCATTGCAGTTGCAGTTCCTAGTGCTGAAGCAGAACAATTTTAGTGGTGCTTTGCCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTTGACGTGTCTGCCAATAATTTCAGTGCTGTGCTTCCTAATTCGAGTTTGGCTGCTAATGCTACTGTTGCGGTGCTCAATATTTCGAACAATAAGTTTTATGGAAACCTCTCTCCTGCTTTAAAAAGGTTTGGGTTTATTGATCTTTCAAACAACTATTTTGAGGGCAAGGTTCTGGATTTCATGCATAATGTATCTCTAGATAGCAATTGTCTCCAGAACGCCACAGATCAGAGATCAACGGCGGAATGTGCATCGTTTTATGCAGAGAGGGGGCTCAGTTTTGATAATTTTGGACAGCCGAATACAACAACACCTCCTGCCTCAAAAAGATCTGGGAAGAGCAATAAGACTAACATTATACTGGCTGCAGTCTTGGGTGGATTGGGTTTAATTGCACTTTTGGTGTTGCTAGTGGTTCTGCTGCTTCTGTGTATTCGTAAGAGGGGTAACTCAAATCAGAGAGGAAACGGTGTGGGTCCTGCGCCTGTTGGCAGCAGTCCTCCAAACCCTGGTGTACCTATCGAATTTCCAAATGTAGGGGACTCATTTACATATCATCAGCTGCTCCAGGCAACAGGAGATTTCAATAATGCAAATCTTATCAAACATGGACACACTGGGGACTTCTTCAATGGTGTTTTGGAAAGTGGGATTCCTGTCGTCATCAAAAGGATCGACATGCGTTCAGCTAAAAAAGAGGCTTACCTGTTGGAGTTGGAGTTCTTCAATAAGGTTTCTCATCAGAGATTCGTTCCATTGTTAGGTCATTGTTTAGAAAATGAGAATGAGAAGTTTCTGGTATATAAAAGCATGCCAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACTACATCCGAAGATGGTACTTTGCAATCACTGGACTGGATAACCAGGTTGAAAATTGCTACTGGAGCCGCAGAGGCCCTGTCGTATCTACATCATGAATGTGTGCCTCCCATTGTTCACAGGGATATTCAAGCAAGCAGTATACTTCTTGACGACAAATACGAAGTTCGGTTGGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGACATTCATCAAAGTAAGATCACCCGGTTTCTGCGGTTGCCTCAGTCCTCAGACCAAGGCCCATCTGGTTATTCAACAACAATTTGTGCCTATGACGTTTATTGCTTGGGAAAAGTTTTACTCGAACTGGTGACCGGTAGGTTGGGAATGAGTGCAGCCAGTGAAGCCGAAGTAAAGGAATGGTTTGATCAGATTCTGCCTTGCATTAATATGTATGAGAAGGAGCTCGTGACGAAAATTATCGATCCATCGATGGTCGTCGACGAAGATTTCCTAGAGGAAGTGTGGGCTATAGCCATTGTTGCCAGGTCTTGCTTAAACCCCAAACCTTCAAGGAGACCCCCAATGAGATATATTCTGAAGGCTTTGGAAAACCCTTTGAAGGTGGTGAGGGAAGAAAATTCCAGTTCTATGCGGCTCAGAGCAACCTCTTCCAGAGGTTCTTGGAACGCTGCTACTTTGTTTGGGAGTTGGCGTCAGAGTTCTTCTGATGTAGCGGCAACTCCAGCAGCCTCAGGTGTAAAACTAGAAAGAGCTGGTAGTTTGAAACTGTCAGGAACCACCGGGTCGCGGTCGCAGTCGCAGGGTAGTTTCCACAATGGCGGCGGTGAGATTTCGTTGTCGCGGAGACGACACTCGAAGGAGATATTCCCAGAGCCATCAGGGGTTGATGATGTAGAGAGGTTGGAGCTGGAATAA 2718 0.4621 MGIVWFRLLLLLVVSQVTLEQIEPLSSSEERESLLELRASLGLRSKEWPRKPDPCLLWVGITCQNGRVVGISISGFKRTRLGRGNPQFAVDALANFTLLQSFNASNFLLPGPIPDWFGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLSSLYLSDNNLIGNVPESLGQLSALAVLDLSRNSLAGSIPTSFGFLGNLSSLDMSANFLSGPIPPEIGSLSRLQYLNLSNNGLATLPSQLGGLTSLVVLDLSQNSFASGGLPQDLVGFRNLRQMILTNSMLTGALPGRLFTDSLQLQFLVLKQNNFSGALPVELWSLPRLSFLDVSANNFSAVLPNSSLAANATVAVLNISNNKFYGNLSPALKRFGFIDLSNNYFEGKVLDFMHNVSLDSNCLQNATDQRSTAECASFYAERGLSFDNFGQPNTTTPPASKRSGKSNKTNIILAAVLGGLGLIALLVLLVVLLLLCIRKRGNSNQRGNGVGPAPVGSSPPNPGVPIEFPNVGDSFTYHQLLQATGDFNNANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSAKKEAYLLELEFFNKVSHQRFVPLLGHCLENENEKFLVYKSMPNGDLSNCLYYKNTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSDQGPSGYSTTICAYDVYCLGKVLLELVTGRLGMSAASEAEVKEWFDQILPCINMYEKELVTKIIDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYILKALENPLKVVREENSSSMRLRATSSRGSWNAATLFGSWRQSSSDVAATPAASGVKLERAGSLKLSGTTGSRSQSQGSFHNGGGEISLSRRRHSKEIFPEPSGVDDVERLELE 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6128g00007 905 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Vium6128g00007 905 Pfam Leucine Rich repeats (2 copies) 219 253 IPR025875 -
Vium6128g00007 905 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Vium6128g00007 905 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 797 - -
Vium6128g00007 905 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 27 186 - -
Vium6128g00007 905 MobiDBLite consensus disorder prediction 878 905 - -
Vium6128g00007 905 Pfam Protein kinase domain 521 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6128g00007 905 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Vium6128g00007 905 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Vium6128g00007 905 SMART LRR_typ_2 217 239 IPR003591 -
Vium6128g00007 905 SMART LRR_typ_2 121 144 IPR003591 -
Vium6128g00007 905 SMART LRR_typ_2 240 265 IPR003591 -
Vium6128g00007 905 SMART LRR_typ_2 145 169 IPR003591 -
Vium6128g00007 905 SMART LRR_typ_2 314 337 IPR003591 -
Vium6128g00007 905 FunFam Putative LRR receptor-like serine/threonine-protein kinase 591 816 - -
Vium6128g00007 905 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Vium6128g00007 905 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 289 419 - -
Vium6128g00007 905 ProSiteProfiles Protein kinase domain profile. 515 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6128g00007 905 FunFam Predicted protein 485 590 - -
Vium6128g00007 905 Gene3D Ribonuclease Inhibitor 186 405 IPR032675 -
Vium6128g00007 905 Gene3D Transferase(Phosphotransferase) domain 1 591 818 - -
Vium6128g00007 905 MobiDBLite consensus disorder prediction 856 875 - -
Vium6128g00007 905 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 285 - -
Vium6128g00007 905 MobiDBLite consensus disorder prediction 856 905 - -
Vium6128g00007 905 SUPERFAMILY L domain-like 91 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6128g00007 Vium-Chr6128 44609 49823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6128g00007 30 688 Miscellaneous Gene Families AT2G16250 56.156 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vium6128g00007 Pkinase 7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6128g00007 - - gmx:100805769 1453.73