Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6128g00003 ATGGCTTCTGCAGAAGTTGAGTTCCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACTGACAACGATGCTCTCGAGAAAGCCTTCTCACCGTATGGCCAGATCCTCGAATCGAAGGTCATCAACGACCGTGAAACTGGAAGATCAAGAGGGTTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCTATCGATGGTATGAACGGCCAGAACCTTGACGGCCGTAACATCACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGTGGTGGAGGCGGCGGTGGTTATGGAAGCGGCGGTGGTGGAGGTTACGGTGGGGGTGGCGGTGGAGGAGGATATGGACGAGGTGGTGGTGGAGGTGGTTACGGTGGAGGCGGCCGCCGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGTGGTTATGGCGGGGGCGGCGGTGGATACGGAGGTGGTGGTTATGGAGGTAGCAGGGACCGTGGATATGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCTTCCGATGGTGGAAGCTGGAGGAATTAG 552 0.5851 MASAEVEFRCFVGGLAWATDNDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQAMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGGGYGSGGGGGYGGGGGGGGYGRGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGGYGGGGYGGSRDRGYGDGGSRYSRGGGASDGGSWRN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6128g00003 183 MobiDBLite consensus disorder prediction 148 183 - -
Vium6128g00003 183 Gene3D - 2 106 IPR012677 -
Vium6128g00003 183 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 163 - -
Vium6128g00003 183 FunFam Glycine-rich RNA-binding protein GRP1A 2 114 - -
Vium6128g00003 183 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vium6128g00003 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vium6128g00003 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vium6128g00003 183 CDD RRM2_NsCP33_like 9 84 - -
Vium6128g00003 183 SUPERFAMILY RNA-binding domain, RBD 8 125 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6128g00003 Vium-Chr6128 12780 13806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6128g00003 10 87 Eukaryotic Initiation Factors Gene Family AT1G22760 34.177 5.09e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6128g00003 - K13195 gsj:114414485 160.999