Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6128g00002 ATGGCTTCTGCAGAAGTTGAGTTCCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACTGACAACGATGCTCTCGAGAAAGCCTTCTCACCGTATGGCCAGATCCTCGAATCGAAGGTCATCAACGACCGTGAAACTGGAAGATCAAGAGGGTTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCTATCGATGGTATGAACGGCCAGAACCTTGACGGCCGTAACATCACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGTGGTGGAGGCGGCGGTGGTGGTGGTTATGGAGGTAGCAGGGACCGTGGATATGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCTTCCGATGGTGGAAGCTGGAGGAATTAG 387 0.5633 MASAEVEFRCFVGGLAWATDNDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQAMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGGGGGYGGSRDRGYGDGGSRYSRGGGASDGGSWRN 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6128g00002 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vium6128g00002 128 Gene3D - 2 124 IPR012677 -
Vium6128g00002 128 SUPERFAMILY RNA-binding domain, RBD 8 117 IPR035979 GO:0003676
Vium6128g00002 128 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vium6128g00002 128 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 123 - -
Vium6128g00002 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vium6128g00002 128 CDD RRM2_NsCP33_like 9 84 - -
Vium6128g00002 128 MobiDBLite consensus disorder prediction 82 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6128g00002 Vium-Chr6128 8103 9206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6128g00002 10 87 Eukaryotic Initiation Factors Gene Family AT2G23350 34.615 8.75e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6128g00002 - K13195 gsj:114414485 160.999