Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6122g00001 ATGTTTCCAGTTCCCAACCAAGCAATTCCAGTTTCCATGGGACCTCTATCCCTAAAGACTCTTGCAACTGTTGGTCAGAATATGAATGCTTCTAGTATGAAGCAACCACTACTAGGGGAAATACCTGTTACAGCACTCCATTCATTTCTTCCTGTAGTTGGTGTTGGTGCTGTTGCTGGAATGACCGAATCATGTGTGAAACCATCTGTATCTGTTCCTAAACTTACCATCTTCTATGCTGGAACTGTGAATGTCTTTGATGATATCACTCCTGAGAAGGCTCAAGCAATCATGTTGATGGCTAGGAATGGCTTACCACTTGCTTCTAAAGTGACAGTACCTAATGTTCAGGCACCCAGACATAGTAAACCCATACCACTTTCAAGTACTTTATCTGTTTCTTCACATACTGGTGCAAAATCAGGGAGTGTTTCAAGTAGCAGTAATGAATTTCTGGCAGCTAAAACATCTGGTGGTACCCCTACTTCTGTTAACAAAGCAGAGACTCCTAAAGTAGTCAACACCAACACCATGCTGCCATCAGCTGTGCCACAAGCTCGCAAGGCATCACTGACTCGATTTTTACATAAGCGCAAGGAGAGGGTATTGAGTGCAGCACCATATAACCTGAACAAGAAGTATGAGAATATGTCAGAACAGAATGCAACTGTTTCTAACATCAGTTCAAGTGAGGGTGTAACCAAGCAAGGATAG 714 0.4272 MFPVPNQAIPVSMGPLSLKTPXATVGQNMNASSMKQPLLGEIPVTALHSFLPVVGVGAVAGMTESCVKPSVSVPKLTIFYAGTVNVFDDITPEKAQAIMLMARNGLPLASKVTVPNVQAPRHSKPIPLSSTLSVSSHTGAKSGSVSSSSNEFLAAKTSGGTPTSVNKAETPKVVNTNTMLPSAVPQARKASLTRFLHKRKERVLSAAPYNLNKKYENMSEQNATVSNISSSEGVTKQG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6122g00001 238 SMART tify_2 69 104 IPR010399 -
Vium6122g00001 238 MobiDBLite consensus disorder prediction 119 147 - -
Vium6122g00001 238 Pfam tify domain 75 102 IPR010399 -
Vium6122g00001 238 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
Vium6122g00001 238 MobiDBLite consensus disorder prediction 123 147 - -
Vium6122g00001 238 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 44 218 IPR040390 -
Vium6122g00001 238 Pfam Jas motif 185 209 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6122g00001 Vium-Chr6122 27615 29457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6122g00001 29 214 Tify Gene Family AT3G17860 38.756 3.06e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium6122g00001 tify 6.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6122g00001 K13464 - gmx:100799314 289.656