Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00033 ATGGTTCAAAGAAAGGTTCCTGGCAAGCTTGGAATCCAAGCTGAACATGTTAAATCAGACAAGAGGTTGGCAAATATGAAGCTATCTTCATCTCAGCACCAAGATGGCAAAAGTAGAGGGGCTGATATGAAGAAGAAAATCAGAAAATCAAGGTCAATAAACCTTTCTGATCTTGAGGCTCTTCAATCATCATCATCATCACCTTCGAGGAGAAGCTTGTCTCAACCAGGAAAGCCACCCCCTCTTCACACTCCAACCACTGCTGCATCAGCATCACCTCAGAAGCAGCAATCTTTGTTCAGAACAACAGATGTTTCACCCAATTACATGAAGCCAACAAGCAGTTCGCATGCAAAAAAGGAACTTTTCCCGGTAAGCCACAGGAACTCTCAATCTGGTTCTGATTTTAAGAATCTTCCGAGAAAATTTTCTACTGATTCCAAAGCTGCCTGTGCTAAAAAACCTGCCAAAGCCTTGGCAAGGTCGTCTAGTTTGAGTTTGGTCAGAACATTGACAAAAACCACTACTTTCAAGGCTTCTAGAGCCTGTCCTAGAAAATCCTCCAGGGCTGTTATGTGTGCAGATATGACTGCACCACAGAGAGCCACTTGTTCTTCAACTTTGAAGGACTCAAAGTTCCCTTCGTACCTCATGCTTAGCCCTGGGGCAACTGAGTCAGAGGGAACTTCAGCCATGAAGGTTTGCCCTTACACGTATTGTTCCCTTAATGGTCATCATCATGTTGATTTGCCGCCATTGAAGAGCTTCATGTCAGCTAGGAGGCGCCTTCTGAAGACGCAGAAGCGCGCCAAGCTTGAAGCTCTCAGCCCTCGGAGACTGAAGGTTCCCCTTGAGACAGATAAGAAGGACTCTGATGTTGAGCAGAACGTTTTTGAGGAAAAATCTGCTTGCGATGAAATTGGCATTGATATCTTCATTGAAATCTATACCAATGAAAAGGATGCAACACCAACAGGAGCAGAAGAAATAGGGAGAAGAGATTTTCTCAAAGAGATTGAGGATCAAGCAGATAACAAGTCACCAATTGAAGATAATGGCGTAGCAGCAAGAACCGTTGGTTTTCCTTCTCCCTCTGTACGTGAACTTGATCTTGAGGAGGATTTGAAAAAGCCCTTTGATGACGTTGCAATCGAAGTAGATACCAACGGCAACTTTCTTCAAGAACAAAGTTCACAAGATGCAGATGAAGATCACCAACCAACTGTCTTGTGTCATGAAGAAATGAGCATGGGAAGCTACTGCAGCGATGGGGAACAAGACATGGGGGATGTTGACATGGATGATTCTGATTCCAGAACCTATGAAATGGAGTGGAAGGAGGAGAGATTTTGTGGATTCGATCACGAAGAGGATGCTGATTCTTCTGTTTACACAGAAGAGGACAACGACTCAAGAGTTGAGTCCTCATCAGAGAGTTCTCATGATGTGTCAGTGACATGGTTAGATGACATCCTTGGCAGCTACTATGAGGACTTTCTGGTTGATGAAACACACAAAAAGGCCAATTCAGAAGAAAACACCCATTTTGAAGAATCTACTGGGATTAGTTCCGTCCTTGAAGACACAAATGGAAGCATTGAAACCAAAGAAATCGAGTACTCCTCCACGGGTTGTGACCAATCTTCATTTACAGAGGAAATATTTGAGTATATGACAAATGCACTAGATAATAGTGGAGAAGATGAGAAACATGTGGATGATGAGGCCGGTTGCAACTCAAAGACACTTGATGAACAGACATTTGACAGCACTCAGAATCAGAAGATGAGTGATACTAGCACAACTGACGGGACAAGTGAAGATGGATGTTCAAGCAGCCTAGAGAACAATGATGAGAGCAGTACAATGGAGAGGGAAATTGAGTTGGTGGATGTGTCTGAGGAATGTAACATGACTGATCAAGATCAGGATTTGTTGGAAAAAGACCAAGGTAAAGGTAGAAGGTTCCAAAGAACAAGTTGCATAGATAGTGAAGATGAAAACACAAGCAAGAATTGGAAAGGTTCAATTAGGAGAAAGAGGGTTGTTGAAGATGATGACGAGATGAGAAAGTTCAACCCCAAAGAGCCAAATTTCCTGCCTTTGGTTCCTGAACCAGAAAAAGAAAAGGTTGACCTGAAGCATCAAATGATGGATGAGAGAAAGAATTCGGAGGAATGGATGCTTGATTGTGCACTCAGACAAGCTGTGACAAAACTTGCACCAGCTAGGAAGAAGAAGGTGGCACTGCTAGTTGAAGCCTTTGAAACGGTGATGCCAGCACCCAAATGTGAAAACCGTGTGAGAAACAATTCAGCATTTGGTCATGCAGGAAGAATTCAAGCTTGTAGCTGA 2355 0.4323 MVQRKVPGKLGIQAEHVKSDKRLANMKLSSSQHQDGKSRGADMKKKIRKSRSINLSDLEALQSSSSSPSRRSLSQPGKPPPLHTPTTAASASPQKQQSLFRTTDVSPNYMKPTSSSHAKKELFPVSHRNSQSGSDFKNLPRKFSTDSKAACAKKPAKALARSSSLSLVRTLTKTTTFKASRACPRKSSRAVMCADMTAPQRATCSSTLKDSKFPSYLMLSPGATESEGTSAMKVCPYTYCSLNGHHHVDLPPLKSFMSARRRLLKTQKRAKLEALSPRRLKVPLETDKKDSDVEQNVFEEKSACDEIGIDIFIEIYTNEKDATPTGAEEIGRRDFLKEIEDQADNKSPIEDNGVAARTVGFPSPSVRELDLEEDLKKPFDDVAIEVDTNGNFLQEQSSQDADEDHQPTVLCHEEMSMGSYCSDGEQDMGDVDMDDSDSRTYEMEWKEERFCGFDHEEDADSSVYTEEDNDSRVESSSESSHDVSVTWLDDILGSYYEDFLVDETHKKANSEENTHFEESTGISSVLEDTNGSIETKEIEYSSTGCDQSSFTEEIFEYMTNALDNSGEDEKHVDDEAGCNSKTLDEQTFDSTQNQKMSDTSTTDGTSEDGCSSSLENNDESSTMEREIELVDVSEECNMTDQDQDLLEKDQGKGRRFQRTSCIDSEDENTSKNWKGSIRRKRVVEDDDEMRKFNPKEPNFLPLVPEPEKEKVDLKHQMMDERKNSEEWMLDCALRQAVTKLAPARKKKVALLVEAFETVMPAPKCENRVRNNSAFGHAGRIQACS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00033 784 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 760 IPR044681 GO:0005516
Vium6121g00033 784 MobiDBLite consensus disorder prediction 583 623 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 37 53 - -
Vium6121g00033 784 SMART CaM_binding_2 648 760 IPR012417 GO:0005516
Vium6121g00033 784 MobiDBLite consensus disorder prediction 1 139 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 85 115 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 456 477 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 55 73 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 125 139 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 456 482 - -
Vium6121g00033 784 MobiDBLite consensus disorder prediction 583 618 - -
Vium6121g00033 784 Pfam Plant calmodulin-binding domain 655 760 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00033 Vium-Chr6121 187056 190463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00033 629 784 Calmodulin-binding Proteins AT2G38800 43.750 2.81e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00033 - - gmx:102660315 1122.07