Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00023 ATGGGTTCTAACTGTGAAGAGATTAATGGTGAAGAAAATGATCCATGCCTATCTGCTATGCTTCTAAGCTTCAGCCCAATGGTTTACACTGCTGTGTTGAATGCTGCCATTGAGCTCAACTTGTTCGAGATCATTGCTAAAGCAACAACAACAACCACAGCCCCATTTGGCGTTTCAGCTTCTGAGATTGCTTCTCAGCTTCCAATTCAGCACAAAAAACTGGCCCAAAGGCTTGATCGCATGCTGTCTGTTCTTGCAAGTCACTGTCTTCTCACTTGCTCTACACTCACAAATCAAGATGGTAAGGTCCAAAGACTCTTTCAGCTTTCAGCTTCCGGAAAGTACTTCATCAATGCAGAAGCCACTGCTTCTTTGGCCTTGTTCACAACGTTTATGAATCATCCAAAGCTTGTTCAGGCATTCCTTAATTTCAAGGAGATACTTCTTGACTGTGATAAGGGCCTATACATGAAAGTTCATGGAATGCCTATTTTTGAAGGCATACAATCTGATCCAACATGGAATCATATCTTCAATGAAGCAATGGCCAATATATGCAGAATAGAGATGACAAAGATACTTGAAATATACAGTGGATTTGAAGGAATATCACTGCTTATTGATGTGGGAGGAGGAGTAGGGCAAAGTTTGAATATCATAATCTCTAAGTATCCTTCCATAAAGGGTGTCAACTTTGATCTTCCACAAGTAATACAACAAGCTCCACCTTATCCAGGAATTGAACATGTTGAAGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATACTATTGAAGGGCATATTGCACAATTGGTCGGATGAAAATTGTTTGAAAGTTCTAAATAATTGCTACAAAGCATTGCCAGAAAATGGAAAGGTGGTTGTTGTAGATTTCATAATGCCTGAAGCAATTGGTTCTTCTGAAGCAGATAAGATGGTTACTAGCTTTGATAACCTGATGTTTCTTGATGGAGGAAGTGAAAGAACAGAAAAAGAGTTTATGAATTTATGCCAAATTTCTGAATTTTCTTCTTTCAGAGTTGTTTCTCGTGCCTTTACTGCTCTTGGAGTAATGGAATTTTATAAATAA 1095 0.3872 MGSNCEEINGEENDPCLSAMLLSFSPMVYTAVLNAAIELNLFEIIAKATTTTTAPFGVSASEIASQLPIQHKKLAQRLDRMLSVLASHCLLTCSTLTNQDGKVQRLFQLSASGKYFINAEATASLALFTTFMNHPKLVQAFLNFKEILLDCDKGLYMKVHGMPIFEGIQSDPTWNHIFNEAMANICRIEMTKILEIYSGFEGISLLIDVGGGVGQSLNIIISKYPSIKGVNFDLPQVIQQAPPYPGIEHVEGDMFESVPKGDAILLKGILHNWSDENCLKVLNNCYKALPENGKVVVVDFIMPEAIGSSEADKMVTSFDNLMFLDGGSERTEKEFMNLCQISEFSSFRVVSRAFTALGVMEFYK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00023 364 PANTHER O-METHYLTRANSFERASE 30 354 IPR016461 GO:0008168
Vium6121g00023 364 Gene3D - 28 193 IPR036388 -
Vium6121g00023 364 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Vium6121g00023 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 353 IPR029063 -
Vium6121g00023 364 SUPERFAMILY "Winged helix" DNA-binding domain 11 118 IPR036390 -
Vium6121g00023 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 364 IPR016461 GO:0008168
Vium6121g00023 364 Gene3D Vaccinia Virus protein VP39 175 352 IPR029063 -
Vium6121g00023 364 Pfam Dimerisation domain 32 86 IPR012967 GO:0046983
Vium6121g00023 364 Pfam O-methyltransferase domain 154 342 IPR001077 GO:0008171
Vium6121g00023 364 FunFam Caffeic acid 3-O-methyltransferase 3 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00023 Vium-Chr6121 152128 153509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00023 1 354 Monolignol Biosynthesis Gene Families AT5G54160 44.475 2.32e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00023 - - gmx:100784030 574.704