Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00021 ATGAATGGGGAAGATAGGGATGAATACCTGGCCCGTATTCTTAACGCATGTGCAAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCATATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATGTTAGTGAAGGTCTAGCCTTCCAAGTTCTGAAAAACTTGCAGGGAGTACCTAAAGCTGTCAATCTGTCAAAGACAACGTCAACCTCGGAAGAACAACTTGTTAAGAAGACATTCTATGACCTGTATCCATTTTTAAAGACTGCATACGTAATCACAAGTCATGCCATTGCTGAAGCTGTTGAAGGAGAAGAAGTGATCCATGTCATTGATCTCTGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCTGAAGAGCCCCTCACTTCTGAAAATCACAGGCATACATGAGAAGAAGGAAATTCTAGAGCAAGTGGACACTCAACTAAGAGCAGAAGCTAAAAGTTTGAACTTCAAACTCGAATTCAATGCTATTGTAAGCACTTTGGAGAATGTTGACCTTGAAGAATTGCCTGTGCAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAGTGGTCTGCAACAGGAGCTCGAAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAACAAAAGACCAACCTCAGTTCTGAATCATCGTTGTTACAACTTTCTCTGTGTGCTACTTCAACCAAGATGATGGACTTTCTAAAGGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAGTGGCAATGGTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAATCAACTGTTTCAACAACACTAGTACAGAGAAACATCATGGAAAGGACTCTACTGGGGCAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAAAGGCATGAGAAACTTGAGACTTGGATCCCAAAGCTAGAAATGGCTGGGTTTGGGAAGAGACATATTAGCCATCATGGGATCACGCAAGCAAGAAAACAGTTGCTCGGTTATGGAAATTGA 1167 0.4259 MNGEDRDEYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTTSTSEEQLVKKTFYDLYPFLKTAYVITSHAIAEAVEGEEVIHVIDLCASDAAQWIYLMHRLKESLKSPSLLKITGIHEKKEILEQVDTQLRAEAKSLNFKLEFNAIVSTLENVDLEELPVQKGEPLAISSVLQLHTLLATDDAVVCNRSSKEEPMHQRTFAEMLGKQKTNLSSESSLLQLSLCATSTKMMDFLKGLWKLQPRVMVVTEQESSGNGSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLETWIPKLEMAGFGKRHISHHGITQARKQLLGYGN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00021 388 ProSiteProfiles GRAS family profile. 1 388 IPR005202 -
Vium6121g00021 388 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 383 IPR005202 -
Vium6121g00021 388 Pfam GRAS domain family 11 384 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00021 Vium-Chr6121 141705 142871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00021 4 387 GRAS Transcription Factor Family AT1G50420 42.184 6.38e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6121g00021 GRAS 5.8e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00021 - - qsa:O6P43_029643 373.629