Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00020 ATGGATAAGCTACTTGGGTCACACCAGCCCTTTAACTTGGTCGAAAAAAAAAACCAAAGCTTTTTGAAAACAAGAAACATAGAATCACTATTATACTATTGTATCTGGACACTGATGCTTGTTTCTCACATTTACATGCTGAGAGGAATGAACATCTTATATATTCTTTTTGGGGTCTTACTTATGCTAATTCCAACTATTATGGATTGAACAGGTTCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGAGTCTCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGAATGGTGAGCTATTTCAGTGAAGCACTTGGACACAGGATAATAAAACATCTGCCAGGTGTATACAAATCTATCAGCCCCTCAAAAACATCACTATCTTCAGACGATATCCTTGCTGAGAAATACTTCTACGAGTTGTGTCCCTTTTTGAAGTTCTCATACCTGATCACAAACCAAGCCATTGTAGAGGCAATGGAATGTGAAATGGTGGTTCACATCATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGGGGAGGTCCACCCCATCTGAAAATTACAGGCATTAATGAGTCGAAGGAAGTGTTGGATCAGGTGAACTTTCATGTGACATCTGAAGCTGGGAAATATGATTTTCCTTTACAGTTCTACCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTGTCTGTTAAGACTGGAGATGCTGTTGCAATAACTTCTGTTCTTCAACTGCATTTGCTTCTTTCCACTGACGATGACATGGCTGGAAGAATCTCACCAGCAGTGGCAGCCTCCATGAATCTGCAGAGAACAGTGCATATGGGCCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTTGGTGCCTCGCCTAAGATGGGGAATCTTCTGAAGGCCATGCGAAAGCTCAATCCAAAACTGGTGGTGGTCACTGAACAGGAATCAAATCTGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCTACTGTAATGAGAACATCAGTTGAGAGACAAAAACTTGAGAGGACTCTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCGAAGGCTTGAAATGGCTGGTTTTGTGAAAGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGCGATAGACCATTGTTTTCTGTATCTGCTTGGAGTTTTAGGAGATGA 1533 0.4038 MDKLLGSHQPFNLVEKKNQSFLKTRNIESLLYYCIWTLMLVSHIYMLRGMNILYILFGVLLMLIPTIMDXTGSPCQWLRELRLESQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTSLSSDDILAEKYFYELCPFLKFSYLITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGGPPHLKITGINESKEVLDQVNFHVTSEAGKYDFPLQFYPVVSKLEDVDFEKLSVKTGDAVAITSVLQLHLLLSTDDDMAGRISPAVAASMNLQRTVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGNLLKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERTLFGEQIKNIIACEGVERKERHEKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSNKYKFREENDCLFVCWSDRPLFSVSAWSFRR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00020 510 ProSiteProfiles GRAS family profile. 81 507 IPR005202 -
Vium6121g00020 510 Pfam GRAS domain family 91 506 IPR005202 -
Vium6121g00020 510 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 86 503 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00020 Vium-Chr6121 137453 139447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00020 56 510 GRAS Transcription Factor Family AT1G50420 48.060 1.03e-147 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6121g00020 GRAS 5.4e-117 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00020 - - vum:124842506 1014.22