Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00007 ATGGCTAAGAAGGGTTGGTTAAGCATGATTAAGAAGCTCTTTTTATGGGGGGCACAGTCCTCACAAACGAAGAAGGAAAAAAGAAGGGTTTGGATATTTGGGAGGGTTAAGACCAAGAGGTTGCCTTCAATTACAGCACCACCACCCTCAAAAGAAACAAGACTAAGTGAAGCTGAAGAAGAACACGGCAAGCATGCTTTAACAGTGGCCATTGCTTCTGCTGCTGCTGCTGAAGCTGCTATCACTGCTGCTCAGGTTGCTGTTGAGGTTGTCAGGCTCCAATCAGCTCATCAACAACTTAATGAAAAACAACAACAGCTTCAACCTGTTAAAACCAGACATGATGCTCCTCATTCCACACACCACTGCCAGAGGAAGATGGAAGAAGCTTCAGCCATCAAAATTCAAACAGCATTCAGAGGTTATCTATCAAGGAAAGCTCTAAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGTGCACTCTGAAGTGCTTGGAGTCCATAGTGAGTATCCAGTCACATGTCTTTGCAAGGAGACTTCAAATGGTTGAAGGAAGATGGGATTGTGGTGAACATGAAGATATGGAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCCTCTTGCATGAACAAGAAAGAAGCAGTTGTTAAGAGAGAAAGAGTAAAAGAATATACCTTCAACCACAGAAAGTCAGCTGAATCAGAAAGAGATAAAATAAATGGAAGATGGAGGTACTGGATGGAACAGTGGGTAGACACACAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGTCTCAGTTTTCAGCTCACATCACTCTAGACCAGGGGAGGAAAGTGGAAGGAGAGAACTAAAACTCAGAAATAATCAGAGACAGAATCAGGTTGAAGGATTAGATTCTCCAGCAGTTTCTTCAAGGAACACATTTCCTCACAGGAGCCAGACTTCAGAGGCAGAAGATCACTCATTCCCAAGCTCACCTGCAATTCCTACATATATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGTTAGGAGGGAATTTTGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGTTACCACTTGTGTCTTCTATTAATCAGCAAAGATCTCCTAGCTTAAAGGGCCTTCCTAGACCTCTGAAGTTAAGTCAGACATTGAGGGATCTCAGCATTAACTCTGATTGCTCTGTGCCAATTTGA 1329 0.4266 MAKKGWLSMIKKLFLWGAQSSQTKKEKRRVWIFGRVKTKRLPSITAPPPSKETRLSEAEEEHGKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAHQQLNEKQQQLQPVKTRHDAPHSTHHCQRKMEEASAIKIQTAFRGYLSRKALRALKGIVKLQAIIRGRAVRRQALCTLKCLESIVSIQSHVFARRLQMVEGRWDCGEHEDMEGSRDKIIRMDSNSERRWDDSILLKEEVDASCMNKKEAVVKRERVKEYTFNHRKSAESERDKINGRWRYWMEQWVDTQLSKSKELEDLVSVFSSHHSRPGEESGRRELKLRNNQRQNQVEGLDSPAVSSRNTFPHRSQTSEAEDHSFPSSPAIPTYMAATKSTQAKARSTSSPRARLGGNFDMNSDSYSPCKKKLPLVSSINQQRSPSLKGLPRPLKLSQTLRDLSINSDCSVPI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00007 442 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Vium6121g00007 442 Pfam Protein of unknown function (DUF4005) 347 405 IPR025064 -
Vium6121g00007 442 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Vium6121g00007 442 MobiDBLite consensus disorder prediction 305 320 - -
Vium6121g00007 442 Gene3D iswi atpase 124 158 - -
Vium6121g00007 442 MobiDBLite consensus disorder prediction 360 394 - -
Vium6121g00007 442 MobiDBLite consensus disorder prediction 321 343 - -
Vium6121g00007 442 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Vium6121g00007 442 MobiDBLite consensus disorder prediction 299 396 - -
Vium6121g00007 442 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vium6121g00007 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 171 IPR027417 -
Vium6121g00007 442 SMART iq_5 127 149 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00007 Vium-Chr6121 69417 72656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00007 3 441 IQD Protein Family AT5G13460 42.947 4.38e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00007 - - gmx:100794802 692.96