Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6121g00001 ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAAATAATGTTCTATTTTTGAATCCAGAGTCATCTAGCAGTTTTCAGGCTTCAGCATCTGTGAACACAGTTCCTGAATTATGTAGGAGTAGCAGCAGAACATGCACCCACACTCACACTTGCAACCCACCTGGCCCTGATGCTGCTCACACACACACATGCTATCACACTCACACCCAAATATTTGCACCTGAAGATGATGACCACAAGGAGCACACCAACTCCAAATCAAAAAGGCCTTCTGGCAACCGAGAAGCAGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACATGGAGGAGGAAGTTAAGAAATTGCGTTTGGTGAATCAGCAACTAGCGAGAAAACTACAAGGGCAGGCACTTCTTGAAGCAGAATTGGCAAGGTTGAGGAGCATTTTGGCACTCCTAAAGGGGAAAATAGACAGTGAATTGGGTGCTTTCCCCTTTCAGAAGCAGTGTAACTCTTACATTCTGAAAGAAGGGGATGCTGGTTTGCTTTCTACTGCAAGGACATATGGCCTTCAGTGTCAGAACAAGTTGCCATGCTTTCATCCACATGCAGGATCATCATCCCAGGTCAACATTTGTGCATATGGAAAGTCCGTGAGTCCATGGGAAGGAAACTGCCAACCTGAAATTGTAGATTGTCATGTTGATGCAAATAACTTGACCAGTACTGAAGGACAAACTGTTGAGACAGTGGATAACTTCTTGTCATCTGCATCTCAAGAGTGA 780 0.4436 MDDGNAELSDKLSNNVLFLNPESSSSFQASASVNTVPELCRSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQIFAPEDDDHKEHTNSKSKRPSGNREAVRKYREKKKAHTAYMEEEVKKLRLVNQQLARKLQGQALLEAELARLRSILALLKGKIDSELGAFPFQKQCNSYILKEGDAGLLSTARTYGLQCQNKLPCFHPHAGSSSQVNICAYGKSVSPWEGNCQPEIVDCHVDANNLTSTEGQTVETVDNFLSSASQE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6121g00001 259 MobiDBLite consensus disorder prediction 74 103 - -
Vium6121g00001 259 CDD bZIP 88 142 - -
Vium6121g00001 259 SMART brlzneu 83 150 IPR004827 GO:0003700|GO:0006355
Vium6121g00001 259 MobiDBLite consensus disorder prediction 74 101 - -
Vium6121g00001 259 Pfam Basic region leucine zipper 87 140 IPR004827 GO:0003700|GO:0006355
Vium6121g00001 259 SUPERFAMILY Leucine zipper domain 86 132 IPR046347 GO:0003700|GO:0006355
Vium6121g00001 259 Gene3D - 76 151 - -
Vium6121g00001 259 PANTHER CCAAT/ENHANCER BINDING PROTEIN 20 163 IPR031106 GO:0003700|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6121g00001 Vium-Chr6121 6684 8597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6121g00001 1 214 bZIP Transcription Factor Family AT2G16770 42.797 2.14e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6121g00001 bZIP_2 3.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6121g00001 K25785 - gmx:100527780 363.614