Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium611g00024 ATGGCACCAAGGATCAATGATGCCACACCCAACAGATCACCCATGAACAGAGGTTCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATTCAATTTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGACGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAGAGAGGAGAGACCAGAANATACGAAGAATCTACTTTCCATTCTCGAAGGAATAACTGTCAGTAACTGGTGGTTGGAGCTTCCCATTTTCTCTGACATATCAATGTCCGATACGAAGGGCAGATACATATAA 495 0.4202 MAPRINDATPNRSPMNRGSWTPEEDRKLAQCIQFHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQREERPEXTKNLLSILEGITVSNWWLELPIFSDISMSDTKGRYI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium611g00024 164 CDD SANT 74 115 IPR001005 -
Vium611g00024 164 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 125 - -
Vium611g00024 164 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Vium611g00024 164 Gene3D - 73 133 - -
Vium611g00024 164 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Vium611g00024 164 Gene3D - 17 69 - -
Vium611g00024 164 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vium611g00024 164 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vium611g00024 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vium611g00024 164 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vium611g00024 164 FunFam MYB-related transcription factor 16 69 - -
Vium611g00024 164 CDD SANT 19 64 IPR001005 -
Vium611g00024 164 MobiDBLite consensus disorder prediction 1 21 - -
Vium611g00024 164 SMART sant 16 66 IPR001005 -
Vium611g00024 164 SMART sant 69 117 IPR001005 -
Vium611g00024 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium611g00024 Vium-Chr611 364994 366279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium611g00024 15 132 MYB Transcription Factor Family AT3G13540 64.407 5.56e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium611g00024 Myb_DNA-binding 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium611g00024 K09422 - gmx:100811754 245.358