Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium611g00021 ATGCAACTGTTTATCTTTTTCACTTGGACCCATTTCTTTAATATGGGAAAGAATTATAAGTACTTAGTAGTTCACAGCTCAACCCACCTCTATTTCAAACCTCTCAATTCATCACATTTTCTCTTCAAACACTCCATCAACAATAATTTCTCTTCCCCAATGGACATGGAAGAATCAAACCCTATGGAAACACAACTTCAACCAACCTCTTCATCATCCTCTTTCTCCATTACTGCCTCCACCTCCACCTCCTCCTCCTCTTCCTCCGTAGACCAACAACCCTCAAACACCAAGGACAAAAAAACCAAGAAAACCAACGTTAACACCAATCATGGCAACCACCCCACGTACAGAGGAGTGCGCATGCGCCAATGGGGCAAATGGGTCTCCGAAATCAGAGAGCCCAGGAAGAAGTCAAGAATTTGGCTCGGAACTTTTCCCACGCCGGACATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAAGGCAGCTCCGCCTTCCTCAATTTCCCCGAATTAGCCGCCGAGCTGCCCCGCCCGACCACGAACTCCCCCAAGGATATCCAAGTGGCCGCCGCCAAAGCCGCCGCCTTGGATTTCCGCCCTCGAAGCCATGAAGCCGAGTCCGAGCTGAGCCGAGGCGGCTCCATTTCCAATTCTTCGTCGAATTCTTCGTTGAAGAGTGAGGATGACACATTCATGGACCTCCCCGATCTCTCTCTGGACTTGAGCCATGGAGTTGATAAGTTTCATTATTCCTCGGCTTGGCTCGTAGCCGGAAGCGAACTGGGGTTTCGGCTTGAAGAGCCTTTTCTTTGGGAATCATATTAA 837 0.5018 MQLFIFFTWTHFFNMGKNYKYLVVHSSTHLYFKPLNSSHFLFKHSINNNFSSPMDMEESNPMETQLQPTSSSSSFSITASTSTSSSSSSVDQQPSNTKDKKTKKTNVNTNHGNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAELPRPTTNSPKDIQVAAAKAAALDFRPRSHEAESELSRGGSISNSSSNSSLKSEDDTFMDLPDLSLDLSHGVDKFHYSSAWLVAGSELGFRLEEPFLWESY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium611g00021 278 MobiDBLite consensus disorder prediction 213 231 - -
Vium611g00021 278 MobiDBLite consensus disorder prediction 52 95 - -
Vium611g00021 278 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Vium611g00021 278 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 MobiDBLite consensus disorder prediction 52 118 - -
Vium611g00021 278 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Vium611g00021 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 95 244 - -
Vium611g00021 278 MobiDBLite consensus disorder prediction 201 231 - -
Vium611g00021 278 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
Vium611g00021 278 FunFam Ethylene-responsive transcription factor 2 116 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium611g00021 Vium-Chr611 303844 305137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium611g00021 109 274 AP2-EREBP Transcription Factor Family AT2G44940 51.232 9.68e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium611g00021 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium611g00021 - - vum:124847320 490.73