Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium611g00014 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATTCCCAATCCTCAACATCTTACTCTCATCTCCTCCTCTACTCATTCGTCTTCCCCTTCCGCTTCAAATCCTTTTAAACCGTCTTGGAACGACGCTTTCGCCTCCTCCGATCGAAACTCGGACTCATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGCGAGAACCCAACGGCGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTGAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAACTTGCACTGGCAAAACAGCTAGGCCTTCTACCAAGACAGGTTGAGGTGTGGTTTCAGAACCGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTCCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCTCCCACCACACTGACCATGTGCCCATCTTGCGAGCGGGTGGCTGTGCCGTCGTCGACCGTGGATGCCGCCACGCGTCATCATCCCATGGGCCAGGCCCAGAGCCACAGTCGGGCCCTAGGCATGGGGCCGTGGGGTTCGGCAGCTTCCATTCCGCAGCGGGGCTTCGATGGTTTCCACCACTGA 888 0.5338 MMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSTHSSSPSASNPFKPSWNDAFASSDRNSDSCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSTVDAATRHHPMGQAQSHSRALGMGPWGSAASIPQRGFDGFHH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium611g00014 295 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Vium611g00014 295 SMART HOX_1 132 194 IPR001356 GO:0003677
Vium611g00014 295 SUPERFAMILY Homeodomain-like 122 191 IPR009057 -
Vium611g00014 295 CDD homeodomain 134 191 IPR001356 GO:0003677
Vium611g00014 295 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Vium611g00014 295 MobiDBLite consensus disorder prediction 105 137 - -
Vium611g00014 295 FunFam Homeobox-leucine zipper protein 18 121 195 - -
Vium611g00014 295 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Vium611g00014 295 MobiDBLite consensus disorder prediction 89 104 - -
Vium611g00014 295 MobiDBLite consensus disorder prediction 82 137 - -
Vium611g00014 295 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Vium611g00014 295 Gene3D - 138 188 - -
Vium611g00014 295 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Vium611g00014 295 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Vium611g00014 295 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Vium611g00014 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 263 - -
Vium611g00014 295 MobiDBLite consensus disorder prediction 259 295 - -
Vium611g00014 295 Coils Coil 189 226 - -
Vium611g00014 295 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium611g00014 Vium-Chr611 152426 154313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium611g00014 1 285 Homeobox Transcription Factor Family AT4G16780 63.793 2.40e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium611g00014 HD-ZIP_N 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium611g00014 K09338 - gmx:100813367 486.108