Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium611g00010 ATGCATATAGAAGAATTGAAGGGGGGTGACATAGAAGAAGGTGAGGAGGAAAGAGGGTTGACGCTTCTGGGTTATGATGCAAAGAGGGTGTTGGTTGGAGCAGGTGCTCGTGTGCTATTCTACCCAACCCTTTTTTACAATGTTGTCAGGAATAAGATTGAGGCTGATTTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCACACTTAAAGAAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAAACTTTGGTTCCGACAACATTATATTATACTCACGGAATTAACCACTTAGTGATCCCTACTAGAGATTACTATTTTGCTCCTTCATTGCATGACATACGACGTGCTGTGAACTTCATACATGAAAATGCAATATCTGGACGCACTACATATGTGCATTGCAAAGCTGGACGCGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGCTGCATATGATTATTTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCACTCAGTGGCAAGTTGTCCAAGAATACTACCACCATATTATGGTGAGGAGGGCAGTTGGATATGCTCCTTCAACCAATCTATTGGTAAGGGCTTCTGAAGGGGCACTAGATTCACAAGATGTTGTGATATTTGATGAAAGCTCTTTTGTCATGGTAACTGGGTCAGATTTAGAAGGTTACAACCCAAGTAATGAATCGAGAACTGTGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTATATCGTGTAAGAGTTGCTGGACAAGCGGCATTTCAGAGAATATCCTGCCTTTGGCTACGATATGGTACTAACCACAATACTTTTACTGCGAAACCAAGCAATCGTCACTTGGGAGAAATTAATGTTGATATCCACATGTACTGA 957 0.4159 MHIEELKGGDIEEGEEERGLTLLGYDAKRVLVGAGARVLFYPTLFYNVVRNKIEADFRWWDKVDEFILLGAVPFPIDVPHLKKLGVRGVITLNESYETLVPTTLYYTHGINHLVIPTRDYYFAPSLHDIRRAVNFIHENAISGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYDYLKSIRPRVLLASTQWQVVQEYYHHIMVRRAVGYAPSTNLLVRASEGALDSQDVVIFDESSFVMVTGSDLEGYNPSNESRTVASEIWADLSVVYRVRVAGQAAFQRISCLWLRYGTNHNTFTAKPSNRHLGEINVDIHMY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium611g00010 318 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Vium611g00010 318 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vium611g00010 318 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 203 IPR029021 -
Vium611g00010 318 FunFam Dual specificity phosphatase domain protein 59 207 - -
Vium611g00010 318 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Vium611g00010 318 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Vium611g00010 318 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Vium611g00010 318 SMART ptp_7 101 212 IPR003595 -
Vium611g00010 318 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Vium611g00010 318 CDD PTPMT1 59 201 IPR044596 GO:0004721
Vium611g00010 318 Pfam Dual specificity phosphatase, catalytic domain 80 201 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium611g00010 Vium-Chr611 124136 127965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium611g00010 1 318 Protein tyrosine phosphatase (PTP) family AT2G35680 56.012 3.24e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium611g00010 - - gmx:100790413 494.197