Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium611g00006 ATGGCCAACGCAGCAGAAGTTTCAGCTTTGAATCGCATCAAGTTGCATCTTTTAGGTGAACTCTCTCCACTCGCCACTCCCCAAAATAATCAAACCAATCAAAGCCCTTCTCAATCTTCTTCCTCAGACTCTTGCCTCTCCTTCGATCACTGCTTCACTGAGCTCCTCGATCCTCAAATTCAATTACCCCTTTTCGAATTCGACTCCAAACCCCAAATAATCGACCTCGACACCCCCAAACCCCTCACATCGACTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGCAGACCGAGTGGATCCAATTTGGGAAACAGGATCCCAACCCGGCTGTGCTATTGCCGGAGAACCAGCCGGAGAAGAAGCACTACAGAGGAGTCCGCCAGCGGCCTTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAGGCCGCCAAGGCCTACGACCGTGCTGCCTTCAGGCTCCGCGGCTCAAAGGCCATCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGAGGAGACCGCAGACGCCGAAGGCGAAAGGAAGCGGCGGCGCGAGGAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTTGTGAAGAAGGAGAAAACGACGGAACAGGAGGTGAACTGTTTTCGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGATAATGATGTGAAGGAGATTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGGATTTTCACAACTAATGGTTGTGTGA 837 0.5412 MANAAEVSALNRIKLHLLGELSPLATPQNNQTNQSPSQSSSSDSCLSFDHCFTELLDPQIQLPLFEFDSKPQIIDLDTPKPLTSTHKKPQLNRKPSLQISLPKQTEWIQFGKQDPNPAVLLPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGAVEETADAEGERKRRREEEEEVEEVKPVVKKEKTTEQEVNCFREMPLTPSMWTGFWDNDVKEIFNVPPLSPLSPLPAFGFSQLMVV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium611g00006 278 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 PRINTS Ethylene responsive element binding protein signature 170 190 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 CDD AP2 129 188 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 Gene3D AP2/ERF domain 129 190 IPR036955 GO:0003700|GO:0006355
Vium611g00006 278 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Vium611g00006 278 MobiDBLite consensus disorder prediction 24 43 - -
Vium611g00006 278 Coils Coil 193 213 - -
Vium611g00006 278 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Vium611g00006 278 FunFam Ethylene-responsive transcription factor 2 129 190 - -
Vium611g00006 278 PANTHER DNA-BINDING DOMAIN 47 211 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium611g00006 Vium-Chr611 77852 78895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium611g00006 1 278 AP2-EREBP Transcription Factor Family AT5G47230 50.000 1.66e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium611g00006 AP2 5.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium611g00006 K09286 - gmx:100800453 355.525