Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6119g00008 ATGGCACTTCACCAATACATTGCTGGGGATTTGAAAACCATAGAAGAAACTGTGACCGAGACAGAAAACTCTAATGGTTGTTTTGACTGTAACATCTGCTTAGACTTTGCACATGATCCAGTGGTGACCCTATGTGGCCACCTCTACTGTTGGCCGTGCATCTACAAGTGGCTTCTCGTCCAACATGATTCTCTTACAACCGCTGAGCGCCCTCAGTGCCCCGTTTGCAAAGCTGTTATATCCAATAGCACAATGGTTCCACTCTATGGCCGTGGCCATTCCACAGCTGAAGGAAAAACATCTTGTGATGTTTTGATACCTCCAAGACCACCAGCTTCATGTGCTCAAGTTCTTGTGGCAGCACCACCTCGAAGGGGTCAGCGTCTTCCATATCGTAATCCTTACCAAGGTCACTATTTCAGCTCTCGTCCTTACCAAGAAGAGGACGCCACTCCTCAAACTCTCAGTCTTGGATCGCACCACTACCCTGTGACTGGAATGTTTGGGGAGATGATTTATTCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGTTCATGGGAAGTTCTACCACTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTTTGCTGCTTCCTTATCTGTCTTCTTGTCTTTTAA 690 0.4536 MALHQYIAGDLKTIEETVTETENSNGCFDCNICLDFAHDPVVTLCGHLYCWPCIYKWLLVQHDSLTTAERPQCPVCKAVISNSTMVPLYGRGHSTAEGKTSCDVLIPPRPPASCAQVLVAAPPRRGQRLPYRNPYQGHYFSSRPYQEEDATPQTLSLGSHHYPVTGMFGEMIYSRVFGNPENLYAYPNSYQFMGSSTTRLRRQEMQAHKSLNRISIFLFCCFLICLLVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6119g00008 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Vium6119g00008 229 SUPERFAMILY RING/U-box 26 89 - -
Vium6119g00008 229 SMART ring_2 30 76 IPR001841 -
Vium6119g00008 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Vium6119g00008 229 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vium6119g00008 229 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vium6119g00008 229 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 126 - -
Vium6119g00008 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6119g00008 Vium-Chr6119 48591 50657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6119g00008 23 215 C3H Transcription Factor Family AT4G27470 42.647 3.08e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6119g00008 K10666 - gmx:100816864 367.466