Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6119g00003 ATGCCTAATATTTACAATGCTCTAGTAGTTACAGGTCGAGATACTATTGGTCAACAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACTACAGATGGTCTAAAGAGAGGAATGGAAGTTATTGACACAGGAACTCCCCTAAGTGTTCCAGTAGGCAGAGCAACTCTAGGACGAATTTTCAATTTGCTTGGAGAGCCGATTGATAATTTAGGTCCTGTAGATACTTGTATAACATCTCTCGTTCATAAATTTGCGCCTACCTTTATACAATTAGATGCAAAATTATCTATTTTTGAAACAAGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTAGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCACGGAAGTGTATCTGTATTTGGCGGAGTAAGTGAGCGTACTCGCGAGGGAAATGATCTTTATATGGAAATGAAAGAATTTGGAGTAATTAATGAACAAAATATTGCAAAATCTAAAGTAGTTCTAATATATGGTCAAATGAATGAACCACCCAGAGCTCTTATGAGAGTTGGTTTAACTGTCCTAACTGTGGCGGAATATTTTCGAAATATCAATGCATTTCTATTTATCGACAATATCTTCCGCTTCGTTCAAGCAAGATTTGAAGTATATGCCTTATTGGGTCGAATGCCCTCTGTTATGGGTTATCAACCCATTCTTAGTACTAAAATGGGTTCTTTACAAAAAAGAATCACTTCTACCAAAGAAGGGCCCATAACTTCTATTCAAACAGTTTATGTACCTGCATACGATTTAACATACCCTGTTACGACATTTGCACATTTTAGATTGGTTTTAGATTTGTTTTAA 933 0.3569 MPNIYNALVVTGRDTIGQQINVTCEVQQLLGNNRVRAVAMSATTDGLKRGMEVIDTGTPLSVPVGRATLGRIFNLLGEPIDNLGPVDTCITSLVHKFAPTFIQLDAKLSIFETRIKVVDLLAPYRRGGKIGLFGGARVGKTVLIMELINNIAKAHGSVSVFGGVSERTREGNDLYMEMKEFGVINEQNIAKSKVVLIYGQMNEPPRALMRVGLTVLTVAEYFRNINEXFLFIDNIFRFVQARFEVYALLGRMPSVMGYQPILSTKMGSLQKRITSTKEGPITSIQTVYVPAYDLTYPXVTTFAHFRLVLDLF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6119g00003 312 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 59 IPR036121 GO:0046034|GO:1902600
Vium6119g00003 312 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 115 301 IPR000194 GO:0005524
Vium6119g00003 312 Gene3D - 60 307 IPR027417 -
Vium6119g00003 312 PANTHER ATP SYNTHASE 1 305 - -
Vium6119g00003 312 CDD ATP-synt_F1_beta_N 1 60 - -
Vium6119g00003 312 Gene3D - 1 59 - -
Vium6119g00003 312 Pfam ATP synthase alpha/beta family, beta-barrel domain 1 57 IPR004100 GO:0046034|GO:1902600
Vium6119g00003 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 302 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6119g00003 Vium-Chr6119 16590 17692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6119g00003 56 297 Primary Pumps ATPases(2) AT1G20260 25.660 3.32e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6119g00003 K02112 - mnt:24286633 489.96