Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6115g00001 ATGAACAACGCAACACGCAACGAAGCGGAGCGCCTCATTGGGATCGCGGAGAAGCTTCTCCAGAACCGTGATTTGATGGGTTCGCGCGAGTTCGCCCTCCTCGCGCAGGAAACTGAACCTCTTCTCGAAGGCTCTGACCAGATCCTCGCCATCGTCGACGTGCTCCTCGCCGCCGACAAGCGCGTCAACAACCACCCAGACTGGTATGCCATCCTTCAGGTCGATCGGCGGTCCGACGACCTTGATGTCATAAAGAAACAGTACCGCCGCCTTGCGCTCCTCCTCCACCCCGATAAGTCCCGCTTCGCCTACGCTGACCACGCCTTCAAGCTCGTCGCCGACGCGTGGGCTCTATTTTCCGATCCCGTGAAGAAGTCTGTGTACGACAAAGAGCTCTCATTCTTCTCCCGCGTCGATTTGTCAGTTCCCGGATGGGTCCAGCAGGAAAAGCTCTCAGTCCGCAGGCCTGGGCCTGGGCCTGAACCCGGGCCAAACACCCGCAACAGTGCCTCTGCCCGCGATCAGATTCACGCTGATGAAAGTTCCCGCAGGAGAAACTCAACTTTCTGGACCGCGTGTCCCTACTGTTACTGTTTGTATGAATACCCTAGGATTTACGAGGGTAATTGTCTACGGTGCCAGAATTGCGATAGATCCTTCCACGGCGTGGCGGTTCCGACGCTGCCGCCGCTGGTCCCCGGCCAGGACGCGTATTATTGCTGCTGGGGCTTCTTCCCCATGGGGTTTGTAATGGGTAACTTTGGTTCACCGGAGAAAGAGGCGGCGGTGGAAGTGCCAGCACCGCAGCCCCCTCCTCCTCCGCCTCCGCCCGCGTCTCAACCGGCTTCTTCTCTGCCGAATTGGATGCCCGTGCCGGCAGATAACGGTGCGCAGGCGACGCCGGTGCCGGCGAGGGTGACTAGGTCTGCGACGACGGTGGCCGCGAGAGCGATGAACGGGACTGGGCCGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATCCATTGCAGTCATGA 1014 0.5986 MNNATRNEAERLIGIAEKLLQNRDLMGSREFALLAQETEPLLEGSDQILAIVDVLLAADKRVNNHPDWYAILQVDRRSDDLDVIKKQYRRLALLLHPDKSRFAYADHAFKLVADAWALFSDPVKKSVYDKELSFFSRVDLSVPGWVQQEKLSVRRPGPGPEPGPNTRNSASARDQIHADESSRRRNSTFWTACPYCYCLYEYPRIYEGNCLRCQNCDRSFHGVAVPTLPPLVPGQDAYYCCWGFFPMGFVMGNFGSPEKEAAVEVPAPQPPPPPPPPASQPASSLPNWMPVPADNGAQATPVPARVTRSATTVAARAMNGTGPKKKRGRPRKYPLQS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6115g00001 337 MobiDBLite consensus disorder prediction 151 180 - -
Vium6115g00001 337 SMART dnaj_3 66 124 IPR001623 -
Vium6115g00001 337 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vium6115g00001 337 MobiDBLite consensus disorder prediction 322 337 - -
Vium6115g00001 337 MobiDBLite consensus disorder prediction 261 337 - -
Vium6115g00001 337 MobiDBLite consensus disorder prediction 264 283 - -
Vium6115g00001 337 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 291 - -
Vium6115g00001 337 MobiDBLite consensus disorder prediction 302 316 - -
Vium6115g00001 337 Pfam DnaJ domain 67 129 IPR001623 -
Vium6115g00001 337 Gene3D DnaJ domain 56 139 IPR036869 -
Vium6115g00001 337 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vium6115g00001 337 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vium6115g00001 337 PRINTS DnaJ domain signature 88 103 IPR001623 -
Vium6115g00001 337 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Vium6115g00001 337 CDD DnaJ 67 121 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6115g00001 Vium-Chr6115 11996 13778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6115g00001 2 335 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 47.191 4.47e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6115g00001 - - gmx:100816918 499.204