Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium610g00007 ATGAAATTCATGCCATGCTTTGTAATTACAAGCGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGACACAACTGGAAAAAGAAAAAGGACGGCAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAGGATAACTCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTGTTAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGGTTGTATTGGATGAAATAGATTCAGGGACCACAACCACATATGCTGGTGACATGACTGACAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATGCCTCTACCATGCCTAATGGAGGTAGTGTTGCATATTTTAATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGTCAACAATCAATCTGCAGAAATTTCTTCTATTAATTGTCATCCTCTGCCAAATGCTGGGAGCAACAGTGTTACTTACAATTTTTCAGAAAGTGCCACACTTCAGATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAATAATATTGTTTCTTTAAGTGCTGGTTCCTTTGACCCTTTGGTCGGTGATAGATTGCAAAGCCAGGGCAGTTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTCGAGTCACCAGTTTCGTCTGTTCATGAACCATATTTGTCCCCGGTAGTGGATGGTCAGCAAATTTCTCAGCCAGAACAAGTATTTACTATCACAGATGTATCCCCTACATGGGTGTCTTCCTCTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTATCGGTGCTGGGTACCACCACATTCTCCAGGAATCGTGAATCTCTACTTGAGTCTTGATGACCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACGCTTGTCTTGCATGATCCTACAGCTGCAATGGAAGAGAATAACAATTGGGACGAGTTTCGACTACAAATGAGGCTTGCGTATTTGCTATTTGCTAAACAACTGAGCCTAGATGTTATCTCCTGTAAAGTACCACCTAATAGACTTAAGGAAGCTAGGCAATTTGCCCTCAGAACATCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACAACCAGATTCCATTTTCACAAGCAAAAGATGCCCTCTTTGGAATTGCATTGAAAAACAGGCTAAGGGAATGGCTTTTCGAAAGAATTGTTCTAGGCTATAAGACGACTGAGTATGATTCACATGGCCAGAGTGTAATCCATTTGTGTGCTATTTTAGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAAAAAATGGTTGCTACTCTGCTGTCTGCCGGGGCAAAGTCAAATTTGGTTACTGATCCCACGCCAAAAAATCCTGGTGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGTTTAGCTGCTTATCTTTCAGAAAAATGTCTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCGTTGGAAACTAGCACAACTGATACAGTAAATTCTGCAAGCCTTACTGATGAGCAGCAGAACATGAAGGACACATTGGCAGCTTACCGAACCGCTGCTGATGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAACATGCGTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGCACATGGAAGATTCGTAAAGAATTTCTCCTCATGCGTCGTCAGGCTGTTAAAATTCAAGCTGCTTTCAGGTGCTTTCAACTACGGAAGCATTATCGCAAAATTCTTTGGTCTGTAGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTCCATGTCAGAACTGTTGAAGTGGGAAAAGGAGATCAGGATAAGGAAAATGTTGTAGAGGAGGAATTCTTTAAGACTGGTAGGAAACAGGCTGAAGAACGTGTTGAGAGATCAGTGGTGAGGGTTCAGGCTATGTTCCGTTCCAAGAAAGCACAAGAAGAGTATAGGAGGATGAAAGTGGCCCTAGATCAAGCAAAGCTGGAACGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2610 0.4211 MKFMPCFVITSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWVVLDEIDSGTTTTYAGDMTDNVKDKSHELRLHEINTLEWDDLVDANDHNASTMPNGGSVAYFNQQDQILLNGSFSNVVNNQSAEISSINCHPLPNAGSNSVTYNFSESATLQMMGNQANPNEQRNNIVSLSAGSFDPLVGDRLQSQGSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYLSPVVDGQQISQPEQVFTITDVSPTWVSSSEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLYLSLDDHKPISQVVNFEYRTLVLHDPTAAMEENNNWDEFRLQMRLAYLLFAKQLSLDVISCKVPPNRLKEARQFALRTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLREWLFERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKSNLVTDPTPKNPGGCTAADLAYMRGHDGLAAYLSEKCLVQHFNDMSLAGNISGSLETSTTDTVNSASLTDEQQNMKDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLHVRTVEVGKGDQDKENVVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKVALDQAKLEREYEQLLSTEVDMELKA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium610g00007 869 ProSiteProfiles Ankyrin repeat region circular profile. 551 579 - -
Vium610g00007 869 ProSiteProfiles IQ motif profile. 738 762 IPR000048 GO:0005515
Vium610g00007 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 765 IPR027417 -
Vium610g00007 869 SMART ANK_2a 590 619 IPR002110 GO:0005515
Vium610g00007 869 SMART ANK_2a 551 580 IPR002110 GO:0005515
Vium610g00007 869 SUPERFAMILY E set domains 315 402 IPR014756 -
Vium610g00007 869 Coils Coil 832 852 - -
Vium610g00007 869 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 846 - -
Vium610g00007 869 SMART iq_5 818 840 IPR000048 GO:0005515
Vium610g00007 869 SMART iq_5 737 759 IPR000048 GO:0005515
Vium610g00007 869 SMART iq_5 714 736 IPR000048 GO:0005515
Vium610g00007 869 FunFam calmodulin-binding transcription activator 5 481 621 - -
Vium610g00007 869 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Vium610g00007 869 SMART CG_1_2 3 93 IPR005559 GO:0003677
Vium610g00007 869 Gene3D - 712 762 - -
Vium610g00007 869 ProSiteProfiles IQ motif profile. 820 848 IPR000048 GO:0005515
Vium610g00007 869 SUPERFAMILY Ankyrin repeat 496 616 IPR036770 -
Vium610g00007 869 ProSiteProfiles CG-1 DNA-binding domain profile. 1 98 IPR005559 GO:0003677
Vium610g00007 869 FunFam Calmodulin-binding transcription activator 5 310 406 - -
Vium610g00007 869 Pfam IQ calmodulin-binding motif 740 759 IPR000048 GO:0005515
Vium610g00007 869 Pfam IQ calmodulin-binding motif 718 735 IPR000048 GO:0005515
Vium610g00007 869 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Vium610g00007 869 Pfam CG-1 domain 10 91 IPR005559 GO:0003677
Vium610g00007 869 Gene3D Immunoglobulins 309 404 IPR013783 -
Vium610g00007 869 ProSiteProfiles IQ motif profile. 662 691 IPR000048 GO:0005515
Vium610g00007 869 Gene3D - 483 621 IPR036770 -
Vium610g00007 869 Pfam Ankyrin repeats (3 copies) 504 579 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium610g00007 Vium-Chr610 20160 29379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium610g00007 5 852 CAMTA Transcription Factor Family AT3G16940 53.231 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium610g00007 Ank_2 7.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium610g00007 K21596 - gmx:100793970 1485.7