Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium610g00006 ATGGCGAATAACTTGACCGCACAACTTGTTGGTTCAGAGATACATGGATTTCACACATTGCAAGATTTGGATGTGAGGAGCATTATGGAGGAAGCGAGAACCAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTTTGTAATTACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGCGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGACACAACTGGAAAAAGAAAAAGGACGGCAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAGGATAACTCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTGTTAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGGTTGTATTGGATGAAATAGATTCAGGGACCACAACCACATATGCTGGTGACATGACTGACAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATGCCTCTACCATGCCTAATGGAGGTAGTGTTGCATATTTTAATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGTCAACAATCAATCTGCAGAAATTTCTTCTATTAATTGTCATCCTCTGCCAAATGCTGGGAGCAACAGTGTTACTTACAATTTTTCAGAAAGTGCCACACTTCAGATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAATAATATTGTTTCTTTAAGTGCTGGTTCCTTTGACCCTTTGGTCGGTGATAGATTGCAAAGCCAGGGCAGTTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTCGAGTCACCAGTTTCGTCTGTTCATGAACCATATTTGTCCCCGGTAGTGGATGGTCAGCAAATTTCTCAGCCAGAACAAGTATTTACTATCACAGATGTATCCCCTACATGGGTGTCTTCCTCTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTATCGGTGCTGGGTACCACCACATTCTCCAGGAATCGTGAATCTCTACTTGAGTCTTGATGACCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACGCTTGTCTTGCATGATCCTACAGCTGCAATGGAAGAGAATAACAATTGGGACGAGTTTCGACTACAAATGAGGCTTGCGTATTTGCTATTTGCTAAACAACTGAGCCTAGATGTTATCTCCTGTAAAGTACCACCTAATAGACTTAAGGAAGCTAGGCAATTTGCCCTCAGAACATCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACAACCAGATTCCATTTTCACAAGCAAAAGATGCCCTCTTTGGAATTGCATTGAAAAACAGGCTAAGGGAATGGCTTTTCGAAAGAATTGTTCTAGGCTATAAGACGACTGAGTATGATTCACATGGCCAGAGTGTAATCCATTTGTGTGCTATTTTAGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAAAAAATGGTTGCTACTCTGCTGTCTGCCGGGGCAAAGTCAAATTTGGTTACTGATCCCACGCCAAAAAATCCTGGTGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGTTTAGCTGCTTATCTTTCAGAAAAATGTCTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCGTTGGAAACTAGCACAACTGATACAGTAAATTCTGCAAGCCTTACTGATGAGCAGCAGAACATGAAGGACACATTGGCAGCTTACCGAACCGCTGCTGATGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAACATGCGTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGCACATGGAAGATTCGTAAAGAATTTCTCCTCATGCGTCGTCAGGCTGTTAAAATTCAAGCTGCTTTCAGGTGCTTTCAACTACGGAAGCATTATCGCAAAATTCTTTGGTCTGTAGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTCCATGTCAGAACTGTTGAAGTGGGAAAAGGAGATCAGGATAAGGAAAATGTTGTAGAGGAGGAATTCTTTAAGACTGGTAGGAAACAGGCTGAAGAACGTGTTGAGAGATCAGTGGTGAGGGTTCAGGCTATGTTCCGTTCCAAGAAAGCACAAGAAGAGTATAGGAGGATGAAAGTGGCCCTAGATCAAGCAAAGCTGGAACGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2769 0.4215 MANNLTAQLVGSEIHGFHTLQDLDVRSIMEEARTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWVVLDEIDSGTTTTYAGDMTDNVKDKSHELRLHEINTLEWDDLVDANDHNASTMPNGGSVAYFNQQDQILLNGSFSNVVNNQSAEISSINCHPLPNAGSNSVTYNFSESATLQMMGNQANPNEQRNNIVSLSAGSFDPLVGDRLQSQGSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYLSPVVDGQQISQPEQVFTITDVSPTWVSSSEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLYLSLDDHKPISQVVNFEYRTLVLHDPTAAMEENNNWDEFRLQMRLAYLLFAKQLSLDVISCKVPPNRLKEARQFALRTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLREWLFERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKSNLVTDPTPKNPGGCTAADLAYMRGHDGLAAYLSEKCLVQHFNDMSLAGNISGSLETSTTDTVNSASLTDEQQNMKDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLHVRTVEVGKGDQDKENVVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKVALDQAKLEREYEQLLSTEVDMELKA 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium610g00006 922 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
Vium610g00006 922 Coils Coil 885 905 - -
Vium610g00006 922 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Vium610g00006 922 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Vium610g00006 922 Pfam IQ calmodulin-binding motif 771 788 IPR000048 GO:0005515
Vium610g00006 922 Gene3D - 765 815 - -
Vium610g00006 922 FunFam calmodulin-binding transcription activator 5 534 674 - -
Vium610g00006 922 Gene3D - 536 674 IPR036770 -
Vium610g00006 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Vium610g00006 922 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Vium610g00006 922 FunFam Calmodulin-binding transcription activator 5 363 459 - -
Vium610g00006 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vium610g00006 922 SUPERFAMILY E set domains 368 455 IPR014756 -
Vium610g00006 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vium610g00006 922 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Vium610g00006 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 899 - -
Vium610g00006 922 SMART ANK_2a 643 672 IPR002110 GO:0005515
Vium610g00006 922 SMART ANK_2a 604 633 IPR002110 GO:0005515
Vium610g00006 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 818 IPR027417 -
Vium610g00006 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Vium610g00006 922 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Vium610g00006 922 Gene3D Immunoglobulins 362 457 IPR013783 -
Vium610g00006 922 Pfam Ankyrin repeats (3 copies) 557 632 IPR002110 GO:0005515
Vium610g00006 922 SUPERFAMILY Ankyrin repeat 549 669 IPR036770 -
Vium610g00006 922 SMART iq_5 871 893 IPR000048 GO:0005515
Vium610g00006 922 SMART iq_5 790 812 IPR000048 GO:0005515
Vium610g00006 922 SMART iq_5 767 789 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium610g00006 Vium-Chr610 20160 29633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium610g00006 28 905 CAMTA Transcription Factor Family AT3G16940 54.370 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium610g00006 CG-1 4.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium610g00006 K21596 - gmx:100793970 1605.11