Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00032 ATGGTGGTTGAAGAGGGTGAGATGAATTCCCAAGGTGAGGCGGAATCAAGATTCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCCCACCATCATCCATTGGAAGAGAAACATCTATATATTCTCTTACACTGGACGAGTTCCAGCACAGTCTATGCGAGACCGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGCAGCGTCTGGAACGCAGAAGAGAATCAAGCCATAATAACCTCTTCCAATCTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACTCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCGCTCTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGAAGTTTTGGATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGAGAACAACCATGTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCGCAGCAGCAGCATTACACGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGAAGGAATGTTATTGGTGAAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGGGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGGGTCCCACGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACTCCCAACTGAGACAGGCGCTGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAG 1218 0.4844 MVVEEGEMNSQGEAESRFQQDANKNHHSQFPPSSIGRETSIYSLTLDEFQHSLCETGKNFGSMNMDEFISSVWNAEENQAIITSSNLPLSQPFTDKDPTTLRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQHDSTNNNEVLDNTESAPRQPTFGEMTLEDFLVKAGVVREQPCAPPQLSHHSHHLQHQQQPQPQQQHYTSNNGAMPGMGSPFVGRNVIGEVSNVVAPGYQVGEASGGYAVNGKRDGGAVFHQQGVSFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLEMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENSQLRQALAELERRRKQQIFEELSNISVQTNAQKVKEKDKLRALRRYMSYP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00032 405 SMART brlzneu 314 378 IPR004827 GO:0003700|GO:0006355
Vium6109g00032 405 MobiDBLite consensus disorder prediction 185 208 - -
Vium6109g00032 405 MobiDBLite consensus disorder prediction 87 116 - -
Vium6109g00032 405 MobiDBLite consensus disorder prediction 132 155 - -
Vium6109g00032 405 Pfam bZIP transcription factor 318 369 IPR004827 GO:0003700|GO:0006355
Vium6109g00032 405 MobiDBLite consensus disorder prediction 177 208 - -
Vium6109g00032 405 Gene3D - 316 367 - -
Vium6109g00032 405 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 37 372 IPR043452 GO:0003700|GO:0045893
Vium6109g00032 405 SUPERFAMILY Leucine zipper domain 318 367 IPR046347 GO:0003700|GO:0006355
Vium6109g00032 405 MobiDBLite consensus disorder prediction 133 155 - -
Vium6109g00032 405 MobiDBLite consensus disorder prediction 1 36 - -
Vium6109g00032 405 Coils Coil 334 375 - -
Vium6109g00032 405 MobiDBLite consensus disorder prediction 12 36 - -
Vium6109g00032 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 321 336 IPR004827 GO:0003700|GO:0006355
Vium6109g00032 405 MobiDBLite consensus disorder prediction 87 110 - -
Vium6109g00032 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 316 368 IPR004827 GO:0003700|GO:0006355
Vium6109g00032 405 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 316 372 - -
Vium6109g00032 405 CDD bZIP_plant_BZIP46 318 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00032 Vium-Chr6109 220565 223051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00032 1 373 bZIP Transcription Factor Family AT2G36270 48.394 1.83e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6109g00032 bZIP_1 9.7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00032 K14432 - gmx:100818567 499.59