Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00022 ATGGCCGAAGAACACCGATGCCAAGCTCCCGAGGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGCAGCCCCGCCACCATGAATCTCTGTTCTAAATGCTACAGAGACATCCGACTCAAGGAAGAAGAACAAGCCAAAACCAAATCCACCATCGAAACTGCTCTGTCTTCGTCCTCCGCCGCAGCAACAGCAACCGTCGCCTCTGTCACCGCTGTGGTTTCCTCGCCTGCGCCGGTTGAATCCCTCCCTCAACCGGCGGTCGTGACCGCGCCGGACGCGTGCGCACCGCTTCAGGCGAACCGATGTGGCGCGTGTCGGAAGCGCGTGGGGTTGACCGGGTTTAAGTGCCGGTGTGGCACCACGTTCTGTGGGACCCACAGGTACCCCGAGAAACACGCCTGTGGCTTCGATTTCAAGGCGGTTGAGAGAGGAGATAGCTCGGGCGAATCCGGTGATCAAAGGGGAGAAGCTACGGAGGATTTAATCGGCGCCGTTGATTGGATGATGTGA 516 0.5911 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSSAAATATVASVTAVVSSPAPVESLPQPAVVTAPDACAPLQANRCGACRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGXRGDSSGESGDQRGEATEDLIGAVDWMM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00022 172 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vium6109g00022 172 Gene3D - 1 64 - -
Vium6109g00022 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Vium6109g00022 172 ProSiteProfiles Zinc finger AN1-type profile. 98 144 IPR000058 GO:0008270
Vium6109g00022 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 144 - -
Vium6109g00022 172 SMART AN1_Zf_4 104 141 IPR000058 GO:0008270
Vium6109g00022 172 Pfam AN1-like Zinc finger 104 140 IPR000058 GO:0008270
Vium6109g00022 172 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vium6109g00022 172 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vium6109g00022 172 SUPERFAMILY AN1-like Zinc finger 98 145 IPR035896 -
Vium6109g00022 172 Gene3D - 86 150 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00022 Vium-Chr6109 128116 129264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00022 1 144 C2H2 Transcription Factor Family AT3G52800 51.656 3.15e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00022 - - gmx:100527251 245.743