Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00018 ATGAATAATGCAATAAACATGTTACAAAATTTGCTACTGTCACTACTGCTACTATTACCCTTTTTCTGTCCTTTGCCCGTTCAAGGATTTAATCAACATGAAAGAAAGCCATATATTGTATACATGGGAAATCTACCAGCGGATACAAACTATGCAGTGAAAGCCCACCACCACAACTTGCTAGAGACTGCGATGGGAAACGAGCAGTTAGCCAGAACGTCCAAAATACATAGTTATGGAAAGAGCTTCAACGGATTTGTTGCACGACTTCTGCCACACGAAGCAGAGAGACTCCAAGAGGAGGAGAGTGTGGTTTCTGTGTTTCCAAATACAGTTCGTCAACCACACACGACAAGGTCGTGGGATTTCCTGGGAATGCCCTTAAACGTGAAGAGAAATTCCATGATAGAAAGTCATATTATTGTGGGGGTGTTGGATACAGGCATTTCGATTGATAGCCCCAGTTTCGACGATACGGGGTATGGACCTCCCCCACGTAGATGGAAAGGCAAATGTGTAACTGGAGCAAACTTTACCGGCTGTAACAACAAGGTGATCGGAGCCACCTACTTCAATCTGGCCCAGAGCAACTCAAGCTACGACAGCGTGAGTCCGGCGGACGACCAGGGTCACGGCACTCACACGTCGTCGATCGTGGCGGGCTCGGTGGTGGAGGGGGCGAGTCTGTTCGGCATTGGCACAGGCACGGCGAGGGGTGGCGTCCCATCAGCCCGTCTGGCTATGTACAAAGTTTGCTGGACCGCAGGCTGCAGCGACATGGACATGCTCGCGGGCTTCGACCAGGCCATTGCGGACGGCGTCAACTTCATCTCCGTTTCCATCGGAGGCCCCGCACATAACTTCCTCAGGGACCCAATTGCCATCGGAGCATTCCATGCTATGAGCAAAGGGATTCTCACTTCTTGCTCCGCCGGCAACAATGGCCCTCGCTACATGTCCGTCGAGAATGTCGCGCCCTGGATTTTGACGGTAGCTGCTTCCTCCACTGATAGACAGTTCTTTACAGCTGCTGCTTTCGGTGATGGAAACAACGTCACAGGAATGTCGATTAATACCTTTTCGCCCAAGAAAAAGATGTATCCATTGACCAGTGGGTTCCTTGCTTCTAACGGTACCGACGATGGCTTTGGCAGTCCTAGGGGTTGTGACTATGGGACTATGAGCAAGGAGAAGGTGAAGGGCAGGATAGTGTACTGTGTCGGGGGAACGGGAACACAGGACTTAACCATCAAAGATCTAGAGGGAGAAGGAACTATCGTAGTCGTTGACGACGTAATAGACGCCTCCTTCTCCACTGTTATTCCAGCTACCTTTGTTGAAGCCAATGCTGTGGACGAAACCATTGATCTCTACATCAATTCCACAAAGAATCCTGTAGCCGTTATTTACAAGACAACATCTAAACAAGTCCCTGCTCCAATGGTTGTTTCTTTTTCATCAAGAGGTCCTCAAACGATCACCCCAAATATCTTCAAGCCTGACTTGACTGCTCCGGGAGTGGACATACTAGCTGCTTATTCCAAACTGGAATCAATAACAGGGTACCGTGAAGACAATCGTTTTGCTGTTTTTAATATATTATCAGGAACATCTATGTCGTGTCCACATGTCGCTGCAACAACTGCGTATGTCAAATCCTTCCACCCTGACTGGAGTCCTGCTGCAATTAAATCTGCTCTAATGACCACTGCCACTCCCGTCACGATCGGTGACAACTTCACGGTACTGGGATCTGGATCAGGACAGATTAATCCTGTGAAAGCATTACATCCTGGTCTGGTCTACGACATCGGAGTGCAATCCTATGTCTCCTTCCTTTGTAAGGAAGGCTTCAACAAAACCAACATTGGTATACTACTTGGCATGAAAAATTTCAATTGCTCAAGCATTAAGATTGAGCCAGGAACGGACGGGATCAACTACCCCAGCATACATATCCAACTTGCCACTCCCCTTGATAGAATTTCTGGAGTTTTCTATCGGACTGTTACTAATGTAGGATTTGGAAATTCAACTTACAAGGCTAAAGTTACAGCCCCTGAAGGTCTTTCAGTGAAGGTCATCCCAGATACATTGCGTTTTATCCAATTGCACCAAAAACTGTCATTTAAGGTTGTTCTGAAGGGCCCCCCAATGTCCTTGGACACGTATCTAAAATCTGCATCACTTGAATGGGACGACTCTAGACACACTGTCAGAAGTCCGATAATTGTCTATAAACCAATGTCATTCTATTGA 2259 0.4737 MNNAINMLQNLLLSLLLLLPFFCPLPVQGFNQHERKPYIVYMGNLPADTNYAVKAHHHNLLETAMGNEQLARTSKIHSYGKSFNGFVARLLPHEAERLQEEESVVSVFPNTVRQPHTTRSWDFLGMPLNVKRNSMIESHIIVGVLDTGISIDSPSFDDTGYGPPPRRWKGKCVTGANFTGCNNKVIGATYFNLAQSNSSYDSVSPADDQGHGTHTSSIVAGSVVEGASLFGIGTGTARGGVPSARLAMYKVCWTAGCSDMDMLAGFDQAIADGVNFISVSIGGPAHNFLRDPIAIGAFHAMSKGILTSCSAGNNGPRYMSVENVAPWILTVAASSTDRQFFTAAAFGDGNNVTGMSINTFSPKKKMYPLTSGFLASNGTDDGFGSPRGCDYGTMSKEKVKGRIVYCVGGTGTQDLTIKDLEGEGTIVVVDDVIDASFSTVIPATFVEANAVDETIDLYINSTKNPVAVIYKTTSKQVPAPMVVSFSSRGPQTITPNIFKPDLTAPGVDILAAYSKLESITGYREDNRFAVFNILSGTSMSCPHVAATTAYVKSFHPDWSPAAIKSALMTTATPVTIGDNFTVLGSGSGQINPVKALHPGLVYDIGVQSYVSFLCKEGFNKTNIGILLGMKNFNCSSIKIEPGTDGINYPSIHIQLATPLDRISGVFYRTVTNVGFGNSTYKAKVTAPEGLSVKVIPDTLRFIQLHQKLSFKVVLKGPPMSLDTYLKSASLEWDDSRHTVRSPIIVYKPMSFY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00018 752 Gene3D Peptidase S8/S53 domain 140 609 IPR036852 GO:0004252|GO:0006508
Vium6109g00018 752 Gene3D - 337 475 - -
Vium6109g00018 752 FunFam Subtilisin-like protease SBT1.5 139 357 - -
Vium6109g00018 752 ProSiteProfiles Serine proteases, subtilase domain profile. 120 596 - -
Vium6109g00018 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 745 IPR045051 -
Vium6109g00018 752 ProSitePatterns Serine proteases, subtilase family, serine active site. 536 546 IPR023828 -
Vium6109g00018 752 Pfam Subtilase family 138 578 IPR000209 GO:0006508|GO:0008236
Vium6109g00018 752 CDD Peptidases_S8_3 114 572 IPR034197 -
Vium6109g00018 752 CDD PA_subtilisin_like 347 469 - -
Vium6109g00018 752 Pfam Peptidase inhibitor I9 38 114 IPR010259 -
Vium6109g00018 752 PRINTS Subtilisin serine protease family (S8) signature 207 220 IPR015500 -
Vium6109g00018 752 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Vium6109g00018 752 PRINTS Subtilisin serine protease family (S8) signature 535 551 IPR015500 -
Vium6109g00018 752 SUPERFAMILY Subtilisin-like 115 600 IPR036852 GO:0004252|GO:0006508
Vium6109g00018 752 Gene3D - 613 748 - -
Vium6109g00018 752 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 27 116 IPR037045 -
Vium6109g00018 752 Pfam Fibronectin type-III domain 646 745 IPR041469 -
Vium6109g00018 752 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 142 152 IPR023827 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00018 Vium-Chr6109 87082 90789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00018 34 570 Subtilisin-like Serine Gene Family AT5G03620 60.182 0.0 655