Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00017 ATGGATGCTGAATCGGAGAAGCGCGCATTCACCTCCACTTCCGTTTCTAGGTCCTCTTCCTGTGAAGGTATGGATCGGCTTGTTGACAAGGAGGAGATGGAAGCGGCTGAGACTCTCGCACAGTTGGCAATGCGTGATTCTCACTCTACTGACAAATGGTGCACCAAACTATGTGCCATTCCTGAAGTTCATCCTTCACCGACTCTTCACTCTGATCCCTCTCTTGGGACTGCGGACCAAGCTATTGCAGATCAGCAGCAAGATGAAAAAGTACACACTACTGCATCTGTAGAAACAGAGAGGACTCAGCAGAATAACTGTTCCGAACCCATGGAGGTAGAGCAGGATGCCAATTTAATACCTAACTCAAGTCATGCCGAGGTGGAACAGGATGCCAATTTAATACATAACTCAAGTCATACGGAGGTGGAACAGGATGCCAATTTAATACATAACTCAAGTCATACGGAGGTGGAGCAGGAGCAGGATTCCAATGTATCACATAAATCAAAGGAGCAGGATTCCAATGTAACTCATAAATCAAATAACCTTTTAGGTCGTTATAACAGGTCAAGGAAAAATTTAACTGAGGAAGAAAAAGAAGCAAGGAGGATGCGCAGGATATTGGCAAATAGAGAGTCAGCCAGGCAGACAATTCGACGTAGGCAGGCTCTGTGTGAGGAATTAACAAAAAAAGCTGCCACTTTGGTGGTGGAGAATGAAAGTCTAAAGAAGGAGAAAGATTTGGCTTTGAAAGAGTATCAGTCTTTGGAGACTACAAATAAGTACTTAAAGGCACAAATCGCCAAGTCAACAAACACAGAAGAAGAGAAAACTCCCGTTGAGCCCGAGTCATCTGTGGCTGAGGTAACACCTTCGTCTGGTAGTGGTCCATGGTTCCTTTATAACCCTTTTCCTGTTCAACATGTATTTTGGCCTTCGCCCCTTCAGCCTACGTATCCAGTTCATTTACCAAATGCATCATTTAATCCCATCATCATTCCATCTATTGCTAATGTTCCATGTTCTTCCGAGTCTGAATTATATCACAAGCAAAATAACCTTATAAATGATAAGCAAACACCAAATCCATTTTACATGTTTCCATGCCCTTGGATATTCCCATGTCCGCAGTTTGGAAATGGACAATCATCACCTTCTTGTAGCCTGAAAGATAAACAAAATAATCTTTCTCTGGGCAAACCTTGTAGTTCTAGTTCATCTTTGAATACACTGGCAAATGTGGATTATCGAGCCTGGACAGAAGCCAGACTCGTTAATGACCCTGCAAGATTTTCATTGGATGGAGGTGAGAAGAAAACAGGATGTCACATTATAGAAAATTATCATGGACCCTCTCTTGGTTGTAATGCTCAAGCTTGTGCTTCCGAACAAGAAAACGAGCTTCAATTGCATTCTGGTCCAAACAATAAAGCATCTTCAACGGCTTATATTGGTGCATCTTCAGTTGAAAAGAAACAAAAACAGTTTATTTGCCAGGGGAAAAGTCTAGCTGATGCAGTTGCTGCGGCAGAAGCAAGAAAGAGGAGAAAGGAACTAACCAAGCAGAAAAGCATCCATAGCCGCCAGTCTCGAATGCAGTGTTGA 1608 0.4279 MDAESEKRAFTSTSVSRSSSCEGMDRLVDKEEMEAAETLAQLAMRDSHSTDKWCTKLCAIPEVHPSPTLHSDPSLGTADQAIADQQQDEKVHTTASVETERTQQNNCSEPMEVEQDANLIPNSSHAEVEQDANLIHNSSHTEVEQDANLIHNSSHTEVEQEQDSNVSHKSKEQDSNVTHKSNNLLGRYNRSRKNLTEEEKEARRMRRILANRESARQTIRRRQALCEELTKKAATLVVENESLKKEKDLALKEYQSLETTNKYLKAQIAKSTNTEEEKTPVEPESSVAEVTPSSGSGPWFLYNPFPVQHVFWPSPLQPTYPVHLPNASFNPIIIPSIANVPCSSESELYHKQNNLINDKQTPNPFYMFPCPWIFPCPQFGNGQSSPSCSLKDKQNNLSLGKPCSSSSSLNTLANVDYRAWTEARLVNDPARFSLDGGEKKTGCHIIENYHGPSLGCNAQACASEQENELQLHSGPNNKASSTAYIGASSVEKKQKQFICQGKSLADAVAAAEARKRRKELTKQKSIHSRQSRMQC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00017 535 MobiDBLite consensus disorder prediction 156 176 - -
Vium6109g00017 535 MobiDBLite consensus disorder prediction 97 111 - -
Vium6109g00017 535 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 201 264 IPR004827 GO:0003700|GO:0006355
Vium6109g00017 535 Coils Coil 510 530 - -
Vium6109g00017 535 MobiDBLite consensus disorder prediction 1 24 - -
Vium6109g00017 535 Coils Coil 185 260 - -
Vium6109g00017 535 PANTHER G-BOX-BINDING FACTOR 3-RELATED 92 279 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium6109g00017 535 MobiDBLite consensus disorder prediction 270 290 - -
Vium6109g00017 535 MobiDBLite consensus disorder prediction 154 201 - -
Vium6109g00017 535 SUPERFAMILY Leucine zipper domain 203 258 IPR046347 GO:0003700|GO:0006355
Vium6109g00017 535 MobiDBLite consensus disorder prediction 84 111 - -
Vium6109g00017 535 CDD bZIP_plant_GBF1 204 255 IPR045314 GO:0003700|GO:0006355
Vium6109g00017 535 SMART brlzneu 199 263 IPR004827 GO:0003700|GO:0006355
Vium6109g00017 535 Pfam bZIP transcription factor 199 261 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00017 Vium-Chr6109 81908 86538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00017 189 535 bZIP Transcription Factor Family AT1G19490 37.500 1.44e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6109g00017 bZIP_1 3.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00017 - - vra:106757437 989.178