Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00016 ATGGATGCTGAATCGGAGAAGCGCGCATTCACCTCCACTTCCGTTTCTAGGTCCTCTTCCTGTGAAGGTATGGATCGGCTTGTTGACAAGGAGGAGATGGAAGCGGCTGAGACTCTCGCACAGTTGGCAATGCGTGATTCTCACTCTACTGACAAATGGTGCACCAAACTATGTGCCATTCCTGAAGTTCATCCTTCACCGACTCTTCACTCTGATCCCTCTCTTGGGACTGCGGACCAAGCTATTGCAGATCAGCAGCAAGATGAAAAAGTACACACTACTGCATCTGTAGAAACAGAGAGGACTCAGCAGAATAACTGTTCCGAACCCATGGAGGTAGAGCAGGATGCCAATTTAATACCTAACTCAAGTCATACGGAGGTGGAACAGGATGCCAATTTAATACATAACTCAAGTCATACGGAGGTGGAGCAGGAGCAGGATTCCAATGTATCACATAAATCAAAGGAGCAGGATTCCAATGTAACTCATAAATCAAATAACCTTTTAGGTCGTTATAACAGGTCAAGGAAAAATTTAACTGAGGAAGAAAAAGAAGCAAGGAGGATGCGCAGGATATTGGCAAATAGAGAGTCAGCCAGGCAGACAATTCGACGTAGGCAGGCTCTGTGTGAGGAATTAACAAAAAAAGCTGCCACTTTGGTGGTGGAGAATGAAAGTCTAAAGAAGGAGAAAGATTTGGCTTTGAAAGAGTATCAGTCTTTGGAGACTACAAATAAGTACTTAAAGGCACAAATCGCCAAGTCAACAAACACAGAAGAAGAGAAAACTCCCGTTGAGCCCGAGTCATCTGTGGCTGAGGTAACACCTTCGTCTGGTAGTGGTCCATGGTTCCTTTATAACCCTTTTCCTGTTCAACATGTATTTTGGCCTTCGCCCCTTCAGCCTACGTATCCAGTTCATTTACCAAATGCATCATTTAATCCCATCATCATTCCATCTATTGCTAATGTTCCATGTTCTTCCGAGTCTGAATTATATCACAAGCAAAATAACCTTATAAATGATAAGCAAACACCAAATCCATTTTACATGTTTCCATGCCCTTGGATATTCCCATGTCCGCAGTTTGGAAATGGACAATCATCACCTTCTTGTAGCCTGAAAGATAAACAAAATAATCTTTCTCTGGGCAAACCTTGTAGTTCTAGTTCATCTTTGAATACACTGGCAAATGTGGATTATCGAGCCTGGACAGAAGCCAGACTCGTTAATGACCCTGCAAGATTTTCATTGGATGGAGGTGAGAAGAAAACAGGATGTCACATTATAGAAAATTATCATGGACCCTCTCTTGGTTGTAATGCTCAAGCTTGTGCTTCCGAACAAGAAAACGAGCTTCAATTGCATTCTGGTCCAAACAATAAAGCATCTTCAACGGCTTATATTGGTGCATCTTCAGTTGAAAAGAAACAAAAACAGTTTATTTGCCAGGGGAAAAGTCTAGCTGATGCAGTTGCTGCGGCAGAAGCAAGAAAGAGGAGAAAGGAACTAACCAAGCAGAAAAGCATCCATAGCCGCCAGTCTCGAATGCAGTGTTGA 1563 0.428 MDAESEKRAFTSTSVSRSSSCEGMDRLVDKEEMEAAETLAQLAMRDSHSTDKWCTKLCAIPEVHPSPTLHSDPSLGTADQAIADQQQDEKVHTTASVETERTQQNNCSEPMEVEQDANLIPNSSHTEVEQDANLIHNSSHTEVEQEQDSNVSHKSKEQDSNVTHKSNNLLGRYNRSRKNLTEEEKEARRMRRILANRESARQTIRRRQALCEELTKKAATLVVENESLKKEKDLALKEYQSLETTNKYLKAQIAKSTNTEEEKTPVEPESSVAEVTPSSGSGPWFLYNPFPVQHVFWPSPLQPTYPVHLPNASFNPIIIPSIANVPCSSESELYHKQNNLINDKQTPNPFYMFPCPWIFPCPQFGNGQSSPSCSLKDKQNNLSLGKPCSSSSSLNTLANVDYRAWTEARLVNDPARFSLDGGEKKTGCHIIENYHGPSLGCNAQACASEQENELQLHSGPNNKASSTAYIGASSVEKKQKQFICQGKSLADAVAAAEARKRRKELTKQKSIHSRQSRMQC 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00016 520 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700|GO:0006355
Vium6109g00016 520 Coils Coil 495 515 - -
Vium6109g00016 520 Pfam bZIP transcription factor 184 246 IPR004827 GO:0003700|GO:0006355
Vium6109g00016 520 MobiDBLite consensus disorder prediction 97 111 - -
Vium6109g00016 520 MobiDBLite consensus disorder prediction 139 186 - -
Vium6109g00016 520 MobiDBLite consensus disorder prediction 255 275 - -
Vium6109g00016 520 MobiDBLite consensus disorder prediction 1 24 - -
Vium6109g00016 520 SMART brlzneu 184 248 IPR004827 GO:0003700|GO:0006355
Vium6109g00016 520 CDD bZIP_plant_GBF1 189 240 IPR045314 GO:0003700|GO:0006355
Vium6109g00016 520 MobiDBLite consensus disorder prediction 84 111 - -
Vium6109g00016 520 SUPERFAMILY Leucine zipper domain 188 241 IPR046347 GO:0003700|GO:0006355
Vium6109g00016 520 Coils Coil 170 245 - -
Vium6109g00016 520 PANTHER G-BOX-BINDING FACTOR 3-RELATED 79 264 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium6109g00016 520 MobiDBLite consensus disorder prediction 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00016 Vium-Chr6109 81906 86538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00016 174 520 bZIP Transcription Factor Family AT1G19490 37.500 6.88e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6109g00016 bZIP_1 3.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00016 - - vra:106757437 956.436