Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00014 ATGAAGGTCATCGCCGCCTATTTGCTCGCCGTCTTGGGAGGCAATGCTGCTCCTTCCGCCGATGACTTGAGGCTCATCCTTGGATCTGTTGGAGCAGACGCAAATGACGACAATATTAGTAACTTCTTGTCCGAAGTCAAGGGCAAAGACATCGCCGAACTTATCGCCGCCGGTAAGGAAAAGTTGGCTTCAGTGCCTTCCGGCGGTGGCGCTGCCGTTGCCGTGACCGCCGCTCCCGGAGGTGGCGCTTCTGCTCCGGCAGCAGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGACGATATGGGCTTCAGTCTTTTTGATTAA 342 0.5439 MKVIAAYLLAVLGGNAAPSADDLRLILGSVGADANDDNISNFLSEVKGKDIAELIAAGKEKLASVPSGGGAAVAVTAAPGGGASAPAAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00014 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vium6109g00014 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vium6109g00014 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium6109g00014 113 Gene3D - 1 59 IPR038716 -
Vium6109g00014 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium6109g00014 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vium6109g00014 113 MobiDBLite consensus disorder prediction 79 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00014 Vium-Chr6109 66025 66966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00014 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 68.142 2.89e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00014 K02943 - gmx:100787024 142.124