Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6109g00013 ATGGGTTCATTCTCTGGCACTTCTGAAATAGTTGAGGCAAGGGAGGAGCTGAATACAAGGAAATCTCCTGGGATTTATCAGTACAATTCTGAGTGTAGCACGTCTGAGAAAAGTCACAAACTTTCGGTGCTGAAACTGGGATGCAAGGATGATCTAGACGATGATATTAATAAGCTGTTTGAATCAATTGCTCTTAAGTCTTCGTCAAGGGATTTGGGTCTTTTACAAGACGGTGCAAGTCCTAGACTGAAAAATGCGTTAAAAAAGCCAATTACAATGGGTGTTCCTCGGTCCCCAAGAGTTGGGGCTTCTGAGCCTGTTAATTTAAAGCAAGCATTAAGAGACCTTTGCATATCTAAGGCATCGGAAATGGCCGCTATGAAGCGATTATCAAAGTCAACAGCTTCTCCAAGAATATCTGAAGTTGGGAAGATACATACATTGTACAATTCAGTTGTAGCTGAAACCAATCGACCTGGGCCTTCCACTGTTGAAAACAAGGAGCGTCAAATTGAAGTAGCTCTTGTACCAGAAAAAAGTAAGTCCCTTTCATTGGTGAAAACCTCTCAATCTTATCAAGCTGCCCAAATCGCATCGTCGAGTCGAAACATTCATTCGTCTCGGCAAATTGCTGTTGCCACCACTCAGTATGATTCTGGGACTTCATTGATACAAAGTGATTTGGCATGCCCATCAAGTAAAGTTGGAATTCAGTCACAAAGAGTGGTACCTGTCGAAACAGAAGAACAAGCATCTGCCTCTTCATCTTCTCTTCCTAATACAATTGGAAGCAAGCTAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGTAATAAAGCATTTGTGTCAAATAACGGGAAGAAAGGTAGGCTGCAAACTGAATCTTTATCTACTTCTGCAAATGGCAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACTGTTAAATCGGTCATCAAGAACAAGAATCTGACTAAGAAGAAACCAAAGGAGGATTCGGGTTCTGCTTTATGTGGTCCTATGCCCAATGCAGTTAAGAAGCCAGTTCCTGGTACGCCTCGGCTAATTTGTGAGAGATGTAGATGTGCTTTAGAAAATACAAGTGAAGAAAAAAACCAAGATGCTGTGCCATTGGACTCTATCGGTCCGGGAAATGGAGTAAACACGAGTAATGTACACTCCGGCTTAAATAAACCTGGTTTGGTGTTAACTGGCGTTAATAAAAGCAAAACAGTTGCAAAAGTCAAGAACTCTAAGTTGAAAGAGCAACTTGAATTTTCACAAAGCTCTAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGCTCAAGTCGTAGCACTAGGCCTCACATGTCAAAAGATGTCAGATGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTTTTGAGCTTGAGAAACTTCAATCTCTTGAAGAAGCTTGGTTGTGGAGACATTGGGACTGTATATCTTGCGGAACTAATTGGCACAAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGGAGAAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATACTAAGGATCCTGGATCATCCTTTTCTTCCCACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTCATCATGGAGTATTGTCCAGGAGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATGTTTTTCAGAGCCAGCAGCAAGGTTCTATGTTGCCGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCGGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAACACTTCTGAAATCGTCTTCTGATGTCGACCCTGCAAAAATTTCTGGTCTAAGTGTGCAATCAAGTTGTATTGAACCATTCTGCATCGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTCCTACCTGCGGCTGCAAAAACAAGGAAATTAAAAGCTGATCCTTCTGCCCAGGTCAGATCATTGCCACAGCTGGTGGCCGAGCCCACTGATGCAAGATCAAACTCCTTTGTTGGTACACATGAATACTTGGCTCCCGAGATCATCAAAGAAGAGGGACATGGAGCTGCCGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTGTATGGTAGAACACCCTTTAAAGGTTCTAACAATGAAGAAACATTGGCCAACGTAGTGATGCAGAGTCTTAGATTCCCTGACCACCCATTTGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGGTTGTTGGTTAAGGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCTGAGATTAAACAACATCCTTTCTTTGAAGGCCTTAACTGGGCCTTAATTCGTTGCGCTGTCCCTCCAGAACTTCCAGACTATTATGATTATGAAGTTTCAGACATGATTAACTCACAGGTTAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCGTGTAGAATTCGAGTTGTTTTAA 2613 0.4252 MGSFSGTSEIVEAREELNTRKSPGIYQYNSECSTSEKSHKLSVLKLGCKDDLDDDINKLFESIALKSSSRDLGLLQDGASPRLKNALKKPITMGVPRSPRVGASEPVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIHTLYNSVVAETNRPGPSTVENKERQIEVALVPEKSKSLSLVKTSQSYQAAQIASSSRNIHSSRQIAVATTQYDSGTSLIQSDLACPSSKVGIQSQRVVPVETEEQASASSSSLPNTIGSKLEVPKNASSPKKLGNKAFVSNNGKKGRLQTESLSTSANGNRVNKLPRHAPRTVKSVIKNKNLTKKKPKEDSGSALCGPMPNAVKKPVPGTPRLICERCRCALENTSEEKNQDAVPLDSIGPGNGVNTSNVHSGLNKPGLVLTGVNKSKTVAKVKNSKLKEQLEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWEAIRHAQMQHGVLSLRNFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLIMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSVQSSCIEPFCIEPSCQVPCFSPRFLPAAAKTRKLKADPSAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVMQSLRFPDHPFVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAVPPELPDYYDYEVSDMINSQVKGAKYLECKVGERVEFELF 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6109g00013 870 PANTHER FLIPPASE KINASE 1-RELATED 221 840 - -
Vium6109g00013 870 FunFam serine/threonine-protein kinase D6PK-like 571 638 - -
Vium6109g00013 870 ProSiteProfiles Protein kinase domain profile. 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6109g00013 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vium6109g00013 870 MobiDBLite consensus disorder prediction 246 310 - -
Vium6109g00013 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 386 400 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 423 464 - -
Vium6109g00013 870 FunFam Serine/threonine-protein kinase D6PK-like 485 570 - -
Vium6109g00013 870 CDD STKc_phototropin_like 487 837 - -
Vium6109g00013 870 SUPERFAMILY Protein kinase-like (PK-like) 460 845 IPR011009 -
Vium6109g00013 870 Gene3D Transferase(Phosphotransferase) domain 1 567 635 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 371 405 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 425 460 - -
Vium6109g00013 870 Gene3D Transferase(Phosphotransferase) domain 1 712 835 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 246 268 - -
Vium6109g00013 870 MobiDBLite consensus disorder prediction 287 307 - -
Vium6109g00013 870 SMART serkin_6 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6109g00013 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6109g00013 870 Pfam Protein kinase domain 488 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6109g00013 870 Gene3D Phosphorylase Kinase; domain 1 485 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6109g00013 Vium-Chr6109 50912 56177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6109g00013 1 870 AGC Kinase Gene Family AT2G36350 50.207 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium6109g00013 Pkinase 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6109g00013 - K08286 gmx:100792120 1447.18