Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6105g00002 ATGGAGAAACACCAAGTTATGCTCCCTACCGCATCTACCTCATCAACAGCTTTATCCTCTCGTTTTAAACATGTTGAGAAACAGGTTTCAGAGATCTCATCTCAGAACCAAAGTGACAAGGAAGCTAAGCACCACCGATATGCATTTCAAACGAGAAGCGCTGTTGATGTTCTGGATGATGGGTACCAGTGGAGAAAATATGGGAAAAAGATAGTCAAAAACAATAGTTTTCCAAGAAGTTACTACAGGTGTGCTCATCGAGAGTGCAATGTTAAGAAACAAATCCAGCGTCATTCCAACGATGAAGAGATTGTGGTCACAACCTACGAAGGAACACATACACACCCTGTGGATAAATCAGTGGAAACCTTCGACCAGATCTTGGGCAACCTACTCAATAATGCACCTCCCACATTGGAATAG 423 0.4255 MEKHQVMLPTASTSSTALSSRFKHVEKQVSEISSQNQSDKEAKHHRYAFQTRSAVDVLDDGYQWRKYGKKIVKNNSFPRSYYRCAHRECNVKKQIQRHSNDEEIVVTTYEGTHTHPVDKSVETFDQILGNLLNNAPPTLE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6105g00002 140 SUPERFAMILY WRKY DNA-binding domain 50 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6105g00002 140 Gene3D WRKY domain 42 118 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6105g00002 140 MobiDBLite consensus disorder prediction 1 20 - -
Vium6105g00002 140 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 120 IPR044810 GO:0003700
Vium6105g00002 140 FunFam WRKY transcription factor 57 44 118 - -
Vium6105g00002 140 ProSiteProfiles WRKY domain profile. 53 118 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6105g00002 140 Pfam WRKY DNA -binding domain 59 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6105g00002 140 SMART WRKY_cls 58 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6105g00002 Vium-Chr6105 8878 10613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6105g00002 46 131 WRKY Transcription Factor Family AT5G13080 68.605 8.54e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6105g00002 WRKY 8e-26 CL0274