Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6100g00006 TATGAAGCTTACATTGTAAAATCTATTGATGCTTTACTTTTGTTTTCCTGTTTTACATCAGAAAAGGAGAACCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAGTCCGTGGCTTTCTACTTTGGAGCGAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTATTCACTATGATTAATGATCTGCCTACTATATTCGAGGTCGTAACTGGATCTGCAATGAAACAGGCCAAGGAGAAGTCATCAGACCGCAACAGCAGCAAATCAAAGTCCGGTTCAAAACGAGGATCTGAATCTGTGAAGTATGTAAAACAAGAAGTGAAGGAGGAGGAGGTATTGGACGAAGAAGTAGACGAGGAACACGGAGAGACCTTGTGTGGCGCTTGTGGGGAGAACTACGCATCCGATGAGTTCTGGATTTGTTGCGACATATGCGAGAAGTGGTTTCATGGGAAGTGTGTGAAAATCACTCCTGCCCGGGCCGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 675 0.443 YEAYIVKSIDALLLFSCFTSEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSGSKRGSESVKYVKQEVKEEEVLDEEVDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6100g00006 224 Pfam PHD-finger 171 220 IPR019787 -
Vium6100g00006 224 Pfam Alfin 18 116 IPR021998 GO:0006355|GO:0042393
Vium6100g00006 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 219 IPR013083 -
Vium6100g00006 224 ProSiteProfiles Zinc finger PHD-type profile. 168 220 IPR019787 -
Vium6100g00006 224 MobiDBLite consensus disorder prediction 122 153 - -
Vium6100g00006 224 SMART PHD_3 170 218 IPR001965 -
Vium6100g00006 224 FunFam PHD finger alfin-like protein 163 219 - -
Vium6100g00006 224 PANTHER CPG BINDING PROTEIN 15 223 IPR045104 GO:0006355|GO:0042393
Vium6100g00006 224 ProSitePatterns Zinc finger PHD-type signature. 171 217 IPR019786 -
Vium6100g00006 224 SUPERFAMILY FYVE/PHD zinc finger 163 222 IPR011011 -
Vium6100g00006 224 CDD PHD_AL_plant 170 220 IPR044104 -
Vium6100g00006 224 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6100g00006 Vium-Chr6100 34999 37794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6100g00006 5 223 Alfin-like Transcription Factor Family AT3G42790 68.610 7.05e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium6100g00006 Alfin 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6100g00006 K26274 - gmx:100170699 348.206