Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium609g00001 ATGGTCCTCAAAACTGAACTATGCAGATTCAGTGGTGCCAAGATTTACCCAGGAAAAGGGATTAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTCTTTGCCAATTCCAAATGCAAGAGGTATTTCCACAACCGCTTGAAGCCATCAAATCTTACCTGGACTGCAATGTACAGGAAGCAACACAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAGAGAAGACGTGCTGCCAAGAAGCCTTACTCTAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAGAAGAGAACTGAGAAGCTAGAAGTTAGAGACGCAGCTAGGGAAGCTGCCCTTCGTGAAATTAAGGAGAGGATCAAGAAGACAAAGGATGAGAAGAAGGCTAAGAAAGCCGAAGTTGCAGCTAAGTCACAAAAAGCAGGAGGTAAAGGCAATGTTTCCAAGGGTGCTATGCCTAAAGGTCCCAAACTCGGTGGTGGAGGCGGGAAGCGCTGA 495 0.4626 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSNLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRTEKLEVRDAAREAALREIKERIKKTKDEKKAKKAEVAAKSQKAGGKGNVSKGAMPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium609g00001 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vium609g00001 164 Gene3D - 69 139 - -
Vium609g00001 164 MobiDBLite consensus disorder prediction 119 136 - -
Vium609g00001 164 FunFam 60S ribosomal protein L24 3 64 - -
Vium609g00001 164 MobiDBLite consensus disorder prediction 119 164 - -
Vium609g00001 164 Coils Coil 112 139 - -
Vium609g00001 164 SMART 4TRASH 8 46 IPR011017 -
Vium609g00001 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vium609g00001 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 156 IPR000988 -
Vium609g00001 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vium609g00001 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vium609g00001 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium609g00001 Vium-Chr609 1859 3925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium609g00001 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 82.803 3.06e-84 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium609g00001 K02896 - gmx:100499720 239.58