Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6085g00009 ATGTCTTCTGATCTTTATACTTTTGACATTCCTTTCCCCAGACATTCAGACACAGACAACATGGTCTCCTATGAAGCAGATGGAAATCTTATGTTTTCCTCTGATCCTTATTCCTTCCCTTTCCTCATAGCCTCTCCGGTTCACGATGTGGCTAAAGGGAATTTTAACAATTCTCTTCACCCTTCTTTTTCCTCTTATTCTCCTCAGCAAAACCAGAGCCTCTGTCATGCTAACCTGGCGCAGCCTCTATCAAATGGCTCAAATATAAAGTCTGAGTTTAGAAATTTCTCTGCTTTGCATGGCTCCGAAGTGACAGGTGAGGAGTTCCAAATGGGTGTGGATTACTCCTGCAATCAGCACTTTCTTTCTCAAACTTTTCATGCTTCTTCTGATAGTGCATCGAAGGTAATACAAAGGAGCTTCAGCTGTAACTCTTTCGGGGTGAAGCCAGGTTTCCCCTTTGAACCTCACCCCGACACTCTCATGGATTCCCCAAATTTTCAATTGCATGCTCTGATTTCCCCCGAAAACAGTTTCTTCACGGGACAAATGAGGAGGGTGTACAGTACTGGAGATTTACAGAACACGAAAGCAACAGATATGTCTCAAGTGGAGAGCCCCTTGTTGGAGGAAGCATACTTCAAAGTGGGGCGTTACAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAAATACAGAGCGAAGAGAAGCCAGAGGAAGTTCAACAAGATTATCAAGTATGCATGCCGAAAGACGCTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCTCGCAACGACGAAATCAGCGAGATTCCGAAATCACTTTCTTCAACTTCGACAACAGAAGAATATGAAGACGAATTCTGGGTTGAGTTCATCGAAGGATTAAACGAGGAGGTCATCGGTTAG 912 0.4408 MSSDLYTFDIPFPRHSDTDNMVSYEADGNLMFSSDPYSFPFLIASPVHDVAKGNFNNSLHPSFSSYSPQQNQSLCHANLAQPLSNGSNIKSEFRNFSALHGSEVTGEEFQMGVDYSCNQHFLSQTFHASSDSASKVIQRSFSCNSFGVKPGFPFEPHPDTLMDSPNFQLHALISPENSFFTGQMRRVYSTGDLQNTKATDMSQVESPLLEEAYFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEISEIPKSLSSTSTTEEYEDEFWVEFIEGLNEEVIG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6085g00009 303 ProSiteProfiles CCT domain profile. 224 266 IPR010402 GO:0005515
Vium6085g00009 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 61 275 IPR045281 GO:0009909
Vium6085g00009 303 Coils Coil 297 303 - -
Vium6085g00009 303 Pfam CCT motif 224 266 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6085g00009 Vium-Chr6085 56731 58806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6085g00009 106 271 C2C2-CO-like Transcription Factor Family AT5G15850 30.108 1.62e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium6085g00009 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6085g00009 - - pvu:PHAVU_002G158500g 513.072