Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6085g00007 ATGGGATTTCCAGTGGGGTACACAGAATGGGTGCTACCCAAGGTGCTTCTTCATCTGCTATCCGTATTGGGCCTCATCAGAAAACTCCTCACCATCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAACCCGACATTGCGTGGCCCGAGAGGCTGCCGGAATTGCAGTCGGTGTCGGCGGTGCTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGCGGGGGCGGAGGGGGAGGCGGCGGAGAGTTGCGCTGTGTGTCTGTACGAGTTCGAGGGAGACGACGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGTTGTCTGGACCGTTGGATGGGGTACGATCAGAGAACGTGTCCCCTCTGTCGGACGCCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTGTGGGCTGCTTCAGGAATCCCTCAATTCTACTACAACGATGAATGA 483 0.5611 MGFPVGYTEWVLPKVLLHLLSVLGLIRKLLTILLCYMGFHDFFEPDIAWPERLPELQSVSAVLIREILPVVKFSEMAGAEGEAAESCAVCLYEFEGDDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFYYNDE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6085g00007 160 SMART ring_2 87 129 IPR001841 -
Vium6085g00007 160 SUPERFAMILY RING/U-box 86 136 - -
Vium6085g00007 160 CDD RING-H2_RHA1-like 87 133 - -
Vium6085g00007 160 SMART ringv_2 86 130 IPR011016 GO:0008270
Vium6085g00007 160 FunFam RING-H2 finger protein ATL73 64 137 - -
Vium6085g00007 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Vium6085g00007 160 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Vium6085g00007 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 150 - -
Vium6085g00007 160 Pfam Ring finger domain 86 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6085g00007 Vium-Chr6085 50481 51487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6085g00007 1 151 C3H Transcription Factor Family AT1G63840 59.236 2.05e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6085g00007 K16281 - gmx:102665617 283.493