Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6085g00005 ATGGCTCGACAACTGTGTGAAGACAAATCATCATCCGAATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACTCCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTTCTTCCTCTTCCAAAACCATGAACGAATCTTCCACCCCTTTCTACCACCGTGACTACAGCAACAAGCCTTCAGATTTCACACCGGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATTGTTGGAGCCCACGATTCGGCCCCGTGGCAAGACGACAACAGCCATAACAGGTTTGACGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGCCAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCACCATCCTGATTTTGTTCCCTCGGGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGTGAGTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGTTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGATAAGCGAGGCGGGAAAACTTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACATATGTAGTGGTTCGTCGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTCGACAGAAGGTACAAGCACTACCGAAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCTGTGGCGGGTAATGGTGCTGCCACGGTGTACTCGGCGTTGGCTCTGAGAGCCATGTCGAGACATTTCAAATGTTTGAAGGATGGGATTTTGGGGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACACCTAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCCCAACGGGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGTGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAACCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAGAACAACATAGCTTCCTCAGAGGGTGCTACTGATCCAGACAATGACATAAACTCAAATGTTCAAAACCCTCCACCCCATACAGCACGATCAGAGGATCAGAAGCCATCATTGCTTAGAATAGACTCCGAGTGTGCGTCCTCCATCATCAACAACCACACCATAGAGAACAAAAACGACCCAAAGAGCCAAGAACAGTGCTTTGGGTCTGTGGAGCTTGATTTTTCATCATACACACACCAGTCCCCGGGCATGGTTTCTTTCGGAAGCAATGATCAAAGCGGGAACAGCCAGAGCGGGGTGTCTCTCACGCTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCATCACAGAGTTCACTGTACTACGCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGCTGAAGGACAAAACCTGCCTTACAGAAATTTAATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1911 0.483 MARQLCEDKSSSEFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDSNAVMWRSFIPKPGSSSSKTMNESSTPFYHRDYSNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNSHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSGSREGFFGKPVSVQQQQMLQDGYVSSNSKAASVYQQGHFLVKNSKYLLPAQDLLNEFCSLDAKISEAGKLKSLKKQWEEDNICSGSSKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALRAMSRHFKCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSEGATDPDNDINSNVQNPPPHTARSEDQKPSLLRIDSECASSIINNHTIENKNDPKSQEQCFGSVELDFSSYTHQSPGMVSFGSNDQSGNSQSGVSLTLGLQQHGVSLAFPPPSQSSLYYANPRDQIEDCQPVQYSLLDAEGQNLPYRNLMGAQLLHDLAG 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6085g00005 636 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677|GO:0006355
Vium6085g00005 636 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677
Vium6085g00005 636 Gene3D - 399 461 - -
Vium6085g00005 636 SMART prehox3 215 345 IPR006563 -
Vium6085g00005 636 FunFam BEL1-like homeodomain protein 4 399 461 - -
Vium6085g00005 636 SMART HOX_1 396 460 IPR001356 GO:0003677
Vium6085g00005 636 SUPERFAMILY Homeodomain-like 397 463 IPR009057 -
Vium6085g00005 636 MobiDBLite consensus disorder prediction 475 499 - -
Vium6085g00005 636 MobiDBLite consensus disorder prediction 474 506 - -
Vium6085g00005 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 483 - -
Vium6085g00005 636 CDD homeodomain 396 457 IPR001356 GO:0003677
Vium6085g00005 636 Pfam Associated with HOX 221 343 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6085g00005 Vium-Chr6085 25245 29073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6085g00005 137 635 Homeobox Transcription Factor Family AT5G41410 48.624 9.23e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium6085g00005 POX 2.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6085g00005 - - gmx:100803088 1094.34