Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6083g00010 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAGCACATAATTGATGGGCGAACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCTCAATATAAGTAGGCAGTCTGGCAGTGCACACGCATCTCCTGGTCCTGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACCGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCCGGTCCCAGCCGAAGCCCATTGATAGGATTTAACTATGGTTTGAATAGGGCCAGTAACTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTCAGTCCTCTTACTGGTGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGAAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAGTGGCAACTCTGCTAGATACACCACTCCTATAGGCTATAGTGGGGTTAATGGGAGAAGCGATACTGTTATGAACTCACCATCTCGTAATTTATGGGGAAATGGGGGCCTCAATAATGCCAATAATCCTGTCAGCCCCAGCCCTTTCCTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCCATTGGAAATAGTGGATCAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGTCTAGGTGGAGCAGGGTACGGAAGAAACAGCAGTTCAGGCGTGACTCCAGCCTCTACATTTAATGTGTCAACTGGTGGTTATGAAGGATCATACGGGGACTTGTACCGTACTGGCAGTGGTTCGGTTTACAATGACTCTGCTTGGCGTTCTGCTGTGTCTGAGATTGATGGTTCTGGTTCATTTAGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCGAATAGAGGAATCGCTGCCTAG 1440 0.4458 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNISRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGFNYGLNRASNYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGVNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYSGNSARYTTPIGYSGVNGRSDTVMNSPSRNLWGNGGLNNANNPVSPSPFLGSGSGAFGVSIGNSGSGWGPSIPAQGGGAASGYGTGNNVYEGGDSSFGLGGAGYGRNSSSGVTPASTFNVSTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFSYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6083g00010 479 Gene3D - 105 185 IPR012677 -
Vium6083g00010 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vium6083g00010 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vium6083g00010 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vium6083g00010 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vium6083g00010 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vium6083g00010 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vium6083g00010 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vium6083g00010 479 Gene3D - 6 87 IPR012677 -
Vium6083g00010 479 MobiDBLite consensus disorder prediction 86 105 - -
Vium6083g00010 479 CDD RRM2_Hrp1p 107 184 - -
Vium6083g00010 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Vium6083g00010 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vium6083g00010 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vium6083g00010 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vium6083g00010 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6083g00010 Vium-Chr6083 68095 72359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6083g00010 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.56e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6083g00010 K14411 - gmx:100805131 898.271