Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium606g00006 ATGCACATGAGCACCTACTCGGAGGGCACCACATCAGGACCCATGGAAGATGAAGATTTGGAGAACAACAATGAGAAGACAGCAATGGTGAGAAAGAAGTCAGAAGTAGTTGTGGCGGTGGCAAGTAATAATGGTCGTTCAGAAATGCTTAGGAATTTGATGACCAATTTGCAAGCGGTGTTTCTTGGTACTAAGCTTGCTGTGCTTTTTCCAGCAGTTCCTTTGGCTGTTGTTGCAACCTTTTATGGCTTTGGAAGGCCTTGGATTTTCGCTTTCAGCCTCCTTGGACTGGCTCCTCTAGCTGAACGTGTCAGCTTCCTGACCGAGCAGATTGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGAAATGCAACCGAGATGATCATAGCATTATTAGCACTTCATCAGAACAAAGTAAATGTTGTGAAGCTGTCCTTGCTTGGTTCCATTCTCTCAAACCTTCTCTTGGTCCTTGGAAGCTCACTCCTCTGTGGTGGTTTAGCCAATCTCAAGAGAGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGGTTCTCTTGCTGGGGCTGCTGTGTCATTTGCTGCCATTGCTGTTCAGATACTCCTTAGGTGGGGCCCATCATTCCATAGCCACTAACACTCTTCAGTTGTCCAGAGCAAGCAGTGTTGTTATGCTTCTAGCATACCTTGCTTACATCTTCTTCCAGTTAAAAACTCACAGAAAATTGTTTGATGCACAAGAGGAGGAGGAAGATGAAGAGAAGGCAGTGATAGGATTTTGGAGTGCATTTACGTGGTTGGTGGGTATGACATTGGTCATATCTTTGCTTTCTGAATATGTAGTAGGAACAATCGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTAAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAATGCTGCAGAACATGCTGGGTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGGGTGGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAAGAATGGATTTAGACTTCAGTCTTCTTGAAACTGGATGTCTTGCTTTTACAATTATAATTACAGCCTTCACTTTACAGGATGGAACTTCCCATTACATGAAAGGAGTGGTTCTTACTCTGTGTTACATTGTCATTGCTGCATGTTTCTTTGTTCTCAAAACTCCTCTAACTGACCAAAATTCTATGGGGAACTGTGGAGCTAAACCATCGTTTGAAGCCATCAACACTTGA 1323 0.4278 MHMSTYSEGTTSGPMEDEDLENNNEKTAMVRKKSEVVVAVASNNGRSEMLRNLMTNLQAVFLGTKLAVLFPAVPLAVVATFYGFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLLFRYSLGGAHHSIATNTLQLSRASSVVMLLAYLAYIFFQLKTHRKLFDAQEEEEDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIITAFTLQDGTSHYMKGVVLTLCYIVIAACFFVLKTPLTDQNSMGNCGAKPSFEAINT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium606g00006 440 Gene3D - 117 265 IPR044880 -
Vium606g00006 440 Gene3D - 266 415 IPR044880 -
Vium606g00006 440 Pfam Sodium/calcium exchanger protein 271 412 IPR004837 GO:0016020|GO:0055085
Vium606g00006 440 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020|GO:0055085
Vium606g00006 440 MobiDBLite consensus disorder prediction 1 20 - -
Vium606g00006 440 FunFam Vacuolar cation/proton exchanger 117 260 - -
Vium606g00006 440 FunFam Vacuolar cation/proton exchanger 261 415 - -
Vium606g00006 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 417 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium606g00006 440 NCBIfam calcium/proton exchanger 71 414 IPR004798 GO:0006816|GO:0015369
Vium606g00006 440 NCBIfam calcium/proton exchanger 52 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium606g00006 Vium-Chr606 155259 159148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium606g00006 23 422 Antiporters AT2G38170 66.993 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium606g00006 K07300 - gmx:100802344 688.337