Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6066g00002 ATGTCTCAGGGAAGAGACAGTGCAAAATCTTTGGTTTTGGTCTCTGTGATTTGTCTACTGTGCCTGTTGGTTCTTTCGAAAGGTGCTAATGCAGCAACTTACACTGTTGGAGGACCTGCAGGATGGAGCTTCAACACTGATACTTGGCCCAATGGAAAAAGGTTCAGAGCTGGTGATATCTTAGTCTTCAAGTATGACTCAACGAGCCACAATGTGGTTGCTGTGGATAAGAGTGGATACAGCAACTGCAGAAGTACAGCAGGTGCAAGAGTGTTCCGTTCAGGGAACGATCAAATCAAGCTGGCAAGAGGACAGAACTACTTCATATGCAACTATCCTGGTCACTGTGAATCTGGGATGAAGATTTCCATTAATGCAGTTTGA 384 0.4479 MSQGRDSAKSLVLVSVICLLCLLVLSKGANAATYTVGGPAGWSFNTDTWPNGKRFRAGDILVFKYDSTSHNVVAVDKSGYSNCRSTAGARVFRSGNDQIKLARGQNYFICNYPGHCESGMKISINAV 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6066g00002 127 FunFam basic blue protein-like 32 126 - -
Vium6066g00002 127 PANTHER BLUE COPPER PROTEIN 31 125 IPR039391 GO:0009055
Vium6066g00002 127 ProSitePatterns Type-1 copper (blue) proteins signature. 104 120 IPR028871 -
Vium6066g00002 127 ProSiteProfiles Phytocyanin domain profile. 32 127 IPR003245 GO:0009055
Vium6066g00002 127 CDD Plantacyanin 32 126 IPR041844 -
Vium6066g00002 127 Gene3D - 32 127 IPR008972 -
Vium6066g00002 127 Pfam Plastocyanin-like domain 43 120 IPR003245 GO:0009055
Vium6066g00002 127 SUPERFAMILY Cupredoxins 32 126 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6066g00002 Vium-Chr6066 29791 30778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6066g00002 12 127 Phytocyanin Superfamily AT1G17800 41.176 4.55e-29 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6066g00002 - - gmx:100788635 201.83