Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6064g00008 ATGTCGTCGGTTTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGACCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACGACACTATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGGTGGCGACCCCACCGGCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAGTGCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGATCGTTGTGACTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCAAAAATTTTATCAGTCGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCGAACTGAATCTAGAGTTGATACTGAAAGTAAAGAACCAAAGAAGAAAGGTGTAAAAAAATTAAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCGTCAGTGAAGCAAAAGATTAAGAGCAGCCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACACCTGATAGTGAATTGAGTGCATCAAGAAGAGATTTGCAGCTGTCTGTTAGGGAGACACTTAACGCAAAGAAAGAAGAGCCTCAGAAAGACTCAGCACCTGGTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCGAAGCCTAAGTTGCAAAAAGCAGGAAGATCCATTCCAGAGAATCATGATACGTCAGCACTAAGGTCCAATGCTGCTAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTGGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAAAAGCAGAAGAAACGCCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAAATCTTTAGCAGCAAAGGAGACACTCCCAGCTAGCGAATCTGAAGATGTTAAAAATGAGGATTTGTCTGACTGGAAAGGTGCCTGTTTAAAATTTACCCCCGAGTCTGGCAAGGACCGCATGTCACGTAATGAGGACCCAAATGATTATGTTGTGCACGACCCTCTTCTGGAAAAGGGGAAAGAAAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTGTTAACATGTCTCTGCTGCTGTGCTGGGAAAGGAAACTTTCGCTAGTAGGAACTAAGCAGAAAGTTGAAGCATTGTGGAGTGTAGCAGACATTGCTGACAAGGACACTCATATTGGAATCGGAAGGATGTTGTGCTATTGTGGGACTGAATATTTTGCAGATGAAGAAGACTTTAGTTGGATATCCATTCCAGAGAATCATGATACGTCAGCACTAAGGTCCAATGCTGCTAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTGGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAAAAGCAGAAGAAACGCCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAAATCTTTAGCAGCAAAGGAGACACTCCCAGCTAGCGAATCTGAAGATGTTAAAAATGAGGATTTGTCTGACTGGAAAGGTGCCAGTTTAAAATTTACCCCCGAGTCTGGCAAGGACCGCATGTCACGTAATGAGGACCCAAATGATTATGTTGTGCACGACCCTCTTCTGGAAAAGGGGAAAGAAAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 2172 0.4374 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDDTIFHRVIKDFLVQGGDPTGSGTGGESIYGGVFADEFHSRLKFKHRGIVAMASAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTESRVDTESKEPKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETPDSELSASRRDLQLSVRETLNAKKEEPQKDSAPGNIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQKAGRSIPENHDTSALRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKKSLAAKETLPASESEDVKNEDLSDWKGACLKFTPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLTVNMSLLLCWERKLSLVGTKQKVEALWSVADIADKDTHIGIGRMLCYCGTEYFADEEDFSWISIPENHDTSALRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKKSLAAKETLPASESEDVKNEDLSDWKGASLKFTPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6064g00008 723 MobiDBLite consensus disorder prediction 260 275 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 605 627 - -
Vium6064g00008 723 Gene3D - 2 182 IPR029000 -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 236 293 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 324 338 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 341 363 - -
Vium6064g00008 723 CDD cyclophilin_CeCYP16-like 8 179 - -
Vium6064g00008 723 Coils Coil 206 233 - -
Vium6064g00008 723 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vium6064g00008 723 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 MobiDBLite consensus disorder prediction 644 691 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 236 250 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 305 363 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 650 664 - -
Vium6064g00008 723 MobiDBLite consensus disorder prediction 675 691 - -
Vium6064g00008 723 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Vium6064g00008 723 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Vium6064g00008 723 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Vium6064g00008 723 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vium6064g00008 723 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6064g00008 Vium-Chr6064 82048 93385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6064g00008 9 172 U-box Gene Family AT5G67530 46.951 2.04e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6064g00008 K12737 - gmx:100793148 825.083