Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6064g00007 ATGAGGTTGAAAGCATGGTGCGTCGGGGTGAGGGTGATGGAAAAGGTTGCAACAGGAAAAAAGTGGGAAAGCATGGCTTTTCTCATTTCCATCTTCACACCGCATCAAGATCAAGAGGACCCCAAAACAAAAGGACACAAACTAACCGAGACCTTCTGTCTCCGCCCCCGTCTCTCACAGCGGAGCAGGAGGTGGCAGACCTTGGCCAAAACCACAACCACAACCACAACCACAACCTCAACCTTAACCTCGGCGATGTCTTCTAATGCCGACTCCACCACCTCCCAGCTCTTGAATGTCACCATGGTAGCCGTTGACAAAGGCAAGAGCTGTGCCCACGCCTTTCGTTGGACCATCAAAAACATAGACAACCCCGTCATCATCGCACTCCATATCAAACACAAAAACATTACTCATCAGAGCACCGATGCTGTACCTCCCGACGAAGACGATGTAGCACATGTTTTCAACCACTTACGTCAAATGTGTCAAGGCAACAATGTCCAGTTGAAAGAAGCCGTGATCCATGACAGTGATATTGTGAGAGGAATAGTGGAATATGCACAGAGAAATCGCGTGAATACTATAGTCGTTGGTGCAGGCTCCTCCAACAGGACTAGTTTTGCAAGAAGTCTTTACCTGAGGAGTGGAAGCAAAAAATTAAAAGGCCATGTGTCAACAGGCGTAATGAAATCAGCACCAGATCATAGTTCTGTGTTTGTGATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGACCGATGGTAAACATGGTTCAACCACCAAGTGAACATGCAAAAAGTGAGAACAGGACGCATGCAATTAGAAGTGGGAGCACCAATGGAAGATCAGAAAGATCACTTGTACTTGAAATGCCAAGGTCTTCTTCAGTTGGTCAATCAATGGAACACAGGTTAATATTTTGCCGCAGCTCGGATGGAACTGACTCTTCAAAGTCGAACAAGTTAGTCTCATCAGATGGAATTAGACAAGAGTGCGATCCATCGGATTCTCAATTCACAGAAGAGTTGGAGAGTGAGATGAAAAGGTTGAAGCTCAAACTGAAGCATACTATGGACATGTTGAGTTCAGCTTGCAAAGAAGCAGTGTCAGCCGAAAGCAAGGCTAAAGAGATTAACCAACGGAAACTGGACGAGGAACGTATAGCTGAGGTGGCCAAGTTGTCTAAAGAGGCAGCACTTGCATTGGCAGAAAAGGAGAAAGTTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAGAGAAGATTTAATGCAGAGATGAAGGCCAGAAGAGAGGCACATGAAAAGGATCGAGCATTGAATCAGTTGGCATGCAGGGATATTCGATGCAGAAAATACAGTATAAGCGATGTTGAAGAGGCCACTCATAAGTTCTCCCCAGCATTGAAAGTAGGTGAAGGTGGATATGGACCCGTCTTTAAAGGCCAACTTGATCACACCCAAGTAGCAATCAAAATTTTGAACCCTGAAGCTACCCACGGAAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTTCTCCTCATTGGTGCATGTCCTGAGTACGGATGTTTAGTGTATGAGTACTTAGAGAATGGTAGCTTAGAAGATAGATTACTGAGGAAAAATGATAGCCCTCCAATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCACTTCTTTTCCTTCACCAAACAAAGCCAGAACCAATTGTGCACAGGGACCTCAAACCTGCCAACATTCTCTTGGACAGGAATTTTGTGAGCAAAATCAGTGATGTGGGTCTTTCAAGACTAGTGCCAGCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCTGCTGCTGGAACCTTTTGTTACATTGACCCTGAGTACCAACAAACTGGGATGCTAACAACAAAATCAGACGTATACTCATTGGGGATAATGCTTCTACAAATCATCACAGCCAAGGCTCCAATGGGGCTTGCTCACCATGTTCTGAAGGCCATTGAAGAGGGAACATTTTCAGAAATGCTTGATCCTTCGATCAACGATTGGCCCCTTGAAGAGACTCTTGAATTTGCCAAACTCTCACTCAACTGTGCAGAGCTCAGCAAAAAGGACAGGCCTGATCTTGCAACCGTGGTTGTGCCAAAGCTTAATCATTTGAGAGACTTTGGGTTAGCATCACAGAACAAGCTGAATCATAGTCATCCTCAACTCCCTCTCTCGCCTACAAGAACTCATCGATCAGATCCATAA 2322 0.4531 MRLKAWCVGVRVMEKVATGKKWESMAFLISIFTPHQDQEDPKTKGHKLTETFCLRPRLSQRSRRWQTLAKTTTTTTTTTSTLTSAMSSNADSTTSQLLNVTMVAVDKGKSCAHAFRWTIKNIDNPVIIALHIKHKNITHQSTDAVPPDEDDVAHVFNHLRQMCQGNNVQLKEAVIHDSDIVRGIVEYAQRNRVNTIVVGAGSSNRTSFARSLYLRSGSKKLKGHVSTGVMKSAPDHSSVFVISKGKIVGARPAIRPMVNMVQPPSEHAKSENRTHAIRSGSTNGRSERSLVLEMPRSSSVGQSMEHRLIFCRSSDGTDSSKSNKLVSSDGIRQECDPSDSQFTEELESEMKRLKLKLKHTMDMLSSACKEAVSAESKAKEINQRKLDEERIAEVAKLSKEAALALAEKEKVKAKAALEAAEEAIKMVEKEAQRRFNAEMKARREAHEKDRALNQLACRDIRCRKYSISDVEEATHKFSPALKVGEGGYGPVFKGQLDHTQVAIKILNPEATHGRRQFQQEVEVLCSIRHPNMVLLIGACPEYGCLVYEYLENGSLEDRLLRKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLSRLVPASVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDVYSLGIMLLQIITAKAPMGLAHHVLKAIEEGTFSEMLDPSINDWPLEETLEFAKLSLNCAELSKKDRPDLATVVVPKLNHLRDFGLASQNKLNHSHPQLPLSPTRTHRSDP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6064g00007 773 SMART serkin_6 477 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6064g00007 773 Coils Coil 343 363 - -
Vium6064g00007 773 MobiDBLite consensus disorder prediction 263 290 - -
Vium6064g00007 773 Pfam Protein tyrosine and serine/threonine kinase 482 736 IPR001245 GO:0004672|GO:0006468
Vium6064g00007 773 MobiDBLite consensus disorder prediction 275 290 - -
Vium6064g00007 773 Gene3D HUPs 88 244 IPR014729 -
Vium6064g00007 773 Gene3D Phosphorylase Kinase; domain 1 447 549 - -
Vium6064g00007 773 Pfam Universal stress protein family 102 232 IPR006016 -
Vium6064g00007 773 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 102 226 - -
Vium6064g00007 773 SUPERFAMILY Protein kinase-like (PK-like) 459 736 IPR011009 -
Vium6064g00007 773 MobiDBLite consensus disorder prediction 313 337 - -
Vium6064g00007 773 Gene3D Transferase(Phosphotransferase) domain 1 550 758 - -
Vium6064g00007 773 ProSiteProfiles Protein kinase domain profile. 477 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6064g00007 773 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 451 549 - -
Vium6064g00007 773 PANTHER OS02G0152300 PROTEIN 101 755 - -
Vium6064g00007 773 MobiDBLite consensus disorder prediction 313 340 - -
Vium6064g00007 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Vium6064g00007 773 MobiDBLite consensus disorder prediction 751 773 - -
Vium6064g00007 773 Coils Coil 394 437 - -
Vium6064g00007 773 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6064g00007 Vium-Chr6064 68996 72817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6064g00007 170 747 Receptor kinase-like Gene Family AT5G12000 56.331 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium6064g00007 PK_Tyr_Ser-Thr 9.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6064g00007 - - var:108336981 1456.04