Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6064g00006 ATGAGTTCTAGAAGACAAGGAATCTCCCACAAATTTTCTCTAGGTGAATCAGAAGTAGCTTGTGAAAGAAAGTTACAGAGCAGGGTTGTTGCAGTTTCACACACAGACCAAATGAGTCCTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGATCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGGTCCAAACTTTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGACTGTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCAAACATTTTACTAGACTCGGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGCATAATGGGAACACAAGGATATGCTGCTCCTGAGTACATAATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGGAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAACTTTATAGCATCATAGATTGTAGACTAGAAGGACAATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTGTTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGGTAACAAACATAAAATATAG 1272 0.43 MSSRRQGISHKFSLGESEVACERKLQSRVVAVSHTDQMSPKRNTWKSVILILGCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDLSISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRKYSAAMPWSTRMKIALGAAKGLVFLHESDKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKLYSIIDCRLEGQFPMKGAMKVAMLAFKCLSPHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGNKHKI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6064g00006 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vium6064g00006 423 Pfam Protein tyrosine and serine/threonine kinase 120 395 IPR001245 GO:0004672|GO:0006468
Vium6064g00006 423 ProSiteProfiles Protein kinase domain profile. 118 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6064g00006 423 Gene3D Phosphorylase Kinase; domain 1 79 200 - -
Vium6064g00006 423 SUPERFAMILY Protein kinase-like (PK-like) 95 396 IPR011009 -
Vium6064g00006 423 PANTHER OS01G0588500 PROTEIN-RELATED 82 399 - -
Vium6064g00006 423 Gene3D Transferase(Phosphotransferase) domain 1 201 405 - -
Vium6064g00006 423 FunFam Serine/threonine-protein kinase BIK1 84 200 - -
Vium6064g00006 423 CDD STKc_IRAK 124 398 - -
Vium6064g00006 423 FunFam Probable serine/threonine-protein kinase PBL8 201 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6064g00006 Vium-Chr6064 45242 47452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6064g00006 106 395 Glycoside Hydrolase AT3G07070 52.218 2.18e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6064g00006 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6064g00006 - - gmx:100802636 744.577