Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6064g00005 ATGAGTTCTAGAAGACAAGGAATCTCCCACAAATTTTCTCTAGGTGAATCAGAAGTAGCTTGTGAAAGAAAGTTACAGAGCAGGGTTGTTGCAGTTTCACACACAGACCAAATGAGTCCTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGATCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGGTCCAAACTTTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGACTGTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGCATAATGGGAACACAAGGATATGCTGCTCCTGAGTACATAATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGGAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAACTTTATAGCATCATAGATTGTAGACTAGAAGGACAATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTGTTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGGTAACAAACATAAAATATAG 1227 0.4328 MSSRRQGISHKFSLGESEVACERKLQSRVVAVSHTDQMSPKRNTWKSVILILGCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDLSISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRKYSAAMPWSTRMKIALGAAKGLVFLHESDKPDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKLYSIIDCRLEGQFPMKGAMKVAMLAFKCLSPHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGNKHKI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6064g00005 408 FunFam Serine/threonine-protein kinase BIK1 84 200 - -
Vium6064g00005 408 Gene3D Transferase(Phosphotransferase) domain 1 201 390 - -
Vium6064g00005 408 PANTHER OS01G0588500 PROTEIN-RELATED 83 384 - -
Vium6064g00005 408 Pfam Protein tyrosine and serine/threonine kinase 120 380 IPR001245 GO:0004672|GO:0006468
Vium6064g00005 408 Gene3D Phosphorylase Kinase; domain 1 79 200 - -
Vium6064g00005 408 SUPERFAMILY Protein kinase-like (PK-like) 95 381 IPR011009 -
Vium6064g00005 408 ProSiteProfiles Protein kinase domain profile. 118 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6064g00005 Vium-Chr6064 45242 47454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6064g00005 106 380 Glycoside Hydrolase AT3G07070 48.123 2.86e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6064g00005 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6064g00005 - - gmx:100802636 706.442