Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6053g00001 ATGCAAACAACCAACTATGTCTTCACCCAAATCAAAGCAGAGAACTACAAAGTGCCACCACCGCCACCACTGCCATCTCTGTCGCACATCACCCCGGCGACTTTGATATTCTCCACCATGGCAGTCGCCGCCTTCTGCTTCCTAGGTGTCGGCATCGTCTACTTCTGTAGGTGCTGTTTCAGGAACATCTCCACCACTAACACAATCGTCCGTCTCTCTCCTCGCGACTCTCCCCACAGAGGCCTCGACCCTTCTCTGCTAAGGATGTTCCCCACGTTCCTCTACGCCACCGTGAAGGATCTCCGCACGGAGAAGAAGTACTCACTCGAATGCGCCATTTGCTTGTTGGAGTTCGACGAGGACTGCCTTCTGCGTCTCTTAACCCCCTGCTGCCACGTTTTCCACCAGGACTGCATCGACTCCTGGCTCCGCTCGCACAGGACTTGCCCCGTTTGCCGAACGGATCTCGATTCCCAGTCAAGTAACACCGACGCGCAGAGACCTCATGAGCAAAACGAGGAGAATATGGAACACGAGAGAAGCGAACACGTGAGCGTTGATGTGAAAGAAGGTGATGAAGGAGATGATGGAGACGAGAGACACGATGATGGTGATGAAGGAGGTTCGATGAATGTGCGCATGCAGCGAGACAAGTTTGCAAGTGCACGTTCACACTCGACAGGGCATTCCATAGTTATGGTTAATGATGACGATGACGCTGCTAAATACACTCTGAGATTGCCACAAGATGTGGCTTTGAAAATTGTAAGAGGGCACCATTACTCCAAGAGTTGTTCTACTTACAAAGACATGGCTGGGCCTTCTTTTGCACCTTGTAGTAACTGTGGTTATGTTCAAACTGTACTTGATAGCTGCAGTAATGGTGTAAACAATACTTAA 900 0.5044 MQTTNYVFTQIKAENYKVPPPPPLPSLSHITPATLIFSTMAVAAFCFLGVGIVYFCRCCFRNISTTNTIVRLSPRDSPHRGLDPSLLRMFPTFLYATVKDLRTEKKYSLECAICLLEFDEDCLLRLLTPCCHVFHQDCIDSWLRSHRTCPVCRTDLDSQSSNTDAQRPHEQNEENMEHERSEHVSVDVKEGDEGDDGDERHDDGDEGGSMNVRMQRDKFASARSHSTGHSIVMVNDDDDAAKYTLRLPQDVALKIVRGHHYSKSCSTYKDMAGPSFAPCSNCGYVQTVLDSCSNGVNNT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6053g00001 299 FunFam E3 ubiquitin-protein ligase ATL6 70 159 - -
Vium6053g00001 299 MobiDBLite consensus disorder prediction 167 190 - -
Vium6053g00001 299 Pfam Ring finger domain 110 153 IPR001841 -
Vium6053g00001 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 163 IPR013083 -
Vium6053g00001 299 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Vium6053g00001 299 PANTHER RING FINGER DOMAIN-CONTAINING 28 163 - -
Vium6053g00001 299 SMART ring_2 111 152 IPR001841 -
Vium6053g00001 299 MobiDBLite consensus disorder prediction 156 211 - -
Vium6053g00001 299 SUPERFAMILY RING/U-box 107 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6053g00001 Vium-Chr6053 15136 16054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6053g00001 28 266 Rapid Response to Elicitors AT3G05200 35.341 1.20e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6053g00001 - - vum:124842333 597.045