Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6051g00011 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAATGGTTTTTTCCATGCTCACCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCATCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATTTGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGGTAA 552 0.4348 MSNLTSASSEISASSGIRNDNGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6051g00011 183 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vium6051g00011 183 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Vium6051g00011 183 Gene3D Classic Zinc Finger 69 93 - -
Vium6051g00011 183 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 183 IPR031140 -
Vium6051g00011 183 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vium6051g00011 183 FunFam protein indeterminate-domain 12-like 49 117 - -
Vium6051g00011 183 MobiDBLite consensus disorder prediction 31 54 - -
Vium6051g00011 183 Gene3D Classic Zinc Finger 104 183 - -
Vium6051g00011 183 SMART c2h2final6 70 92 IPR013087 -
Vium6051g00011 183 SMART c2h2final6 111 141 IPR013087 -
Vium6051g00011 183 SMART c2h2final6 146 166 IPR013087 -
Vium6051g00011 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6051g00011 Vium-Chr6051 73529 75273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6051g00011 31 183 IDZ Gene Family AT3G50700 82.803 1.05e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6051g00011 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6051g00011 K25870 - gmx:100807813 337.035