Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6051g00008 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAATGGTTTTTTCCATGCTCACCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCATCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATTTGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCGAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGAAGAGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGTGGAAGAGCAGTGAACCCTCACTCTCTATTATCATCTCAGTCCCAATTTCGAAGCCATGGGCTTCAACTTGAAGCAGCAACATCACTGGTGATGAAAAGAGAACAAGATTTCAACCTATTAGGTCAAGAAATTCCATCATGGTTATCTTCTCCAACAGTGTTGGAAGAATCAATGCACAGTCAAACACTGAGAACCACCTTAGACTTCACAACACCACAGTTGTTTCCCACACATGCGAACCACTCATTGTTCCACCATGATCAAAACCCTAGCCCTACTACTACTACTTCTACAACAACAGCTTCAACACCCACTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACCACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAGATTGGCGTAACAGTGAGTGCAGCACCTTCACAAGCGATGATAGTGAGACCCCACTTGTTTCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACAACTACTACTACAACAGGGTATAATAATATGGCTTCATCTTCACCCGTTTCTGGAATGCTTATGGCTATACCTTCACGTGAACAAATAGGGACTCATGGATTTGCTCGTGGCTTGGCATCTTGA 1221 0.439 MSNLTSASSEISASSGIRNDNGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSQSQFRSHGLQLEAATSLVMKREQDFNLLGQEIPSWLSSPTVLEESMHSQTLRTTLDFTTPQLFPTHANHSLFHHDQNPSPTTTTSTTTASTPTFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAAPSQAMIVRPHLFLQQVHVPECTTTTTTTTGYNNMASSSPVSGMLMAIPSREQIGTHGFARGLAS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6051g00008 406 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vium6051g00008 406 MobiDBLite consensus disorder prediction 281 304 - -
Vium6051g00008 406 FunFam protein indeterminate-domain 12-like 49 117 - -
Vium6051g00008 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 357 IPR031140 -
Vium6051g00008 406 MobiDBLite consensus disorder prediction 31 54 - -
Vium6051g00008 406 Gene3D Classic Zinc Finger 51 120 - -
Vium6051g00008 406 Gene3D Classic Zinc Finger 124 202 - -
Vium6051g00008 406 SMART c2h2final6 70 92 IPR013087 -
Vium6051g00008 406 SMART c2h2final6 111 141 IPR013087 -
Vium6051g00008 406 SMART c2h2final6 146 166 IPR013087 -
Vium6051g00008 406 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vium6051g00008 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vium6051g00008 406 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6051g00008 Vium-Chr6051 67428 71681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6051g00008 31 342 IDZ Gene Family AT3G50700 53.754 9.73e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6051g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6051g00008 K25870 - gmx:100783557 571.622