Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6050g00001 ATGGAATTTGACGACCACGAAGAGCAGGAGGAGGAAGAAGAAGAGGAAGAGGAGGAGGAAGAGGAAATGGGATTCTCAGTGGCGGCGCCGGGTTACGATTCCTTCGGAAACGCGGCGCCCAGGTCTAAAATGAGCGCAGCTGAGGGAGTTCCGGCCACCGTTAACTCCGGTCGCAAAGGCGGCTCCGCGGGGACGAGCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGTCACGCCGTCGATGGCTGCTGCGAGTTCTTGGCCGCAGGAGAGGACGGCACGCTGGAGGCCGTAATTTGCGCGGCCTGTAATTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCTCTTACCAACTGCGCTCGCAGCCGCAGCCCCAGCCGCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGGGCCACCACCTTCCTCCGCGGGATACCTCCACCCCCACCACCTGTTAACCACTCCGGTGTCGCAGCATCGGCCTTTGGCTCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGAGGTGGCGGTTTTGGTGGTGGTGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCACGACGAAGCTGCCGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACACGTGCTGAAGGTCTGGATGCACAATAACAAACACACTCTAGGTAAGAAACCCTAA 849 0.5736 MEFDDHEEQEEEEEEEEEEEEEMGFSVAAPGYDSFGNAAPRSKMSAAEGVPATVNSGRKGGSAGTSRYRECQKNHAVSIGGHAVDGCCEFLAAGEDGTLEAVICAACNCHRNFHRKEIDGEISSYQLRSQPQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHPHHLLTTPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGFGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLGKKP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6050g00001 282 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 278 - -
Vium6050g00001 282 Gene3D - 209 279 - -
Vium6050g00001 282 FunFam Zinc-finger homeodomain protein 2 212 280 - -
Vium6050g00001 282 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
Vium6050g00001 282 NCBIfam homeobox domain, ZF-HD class 219 275 IPR006455 -
Vium6050g00001 282 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Vium6050g00001 282 MobiDBLite consensus disorder prediction 127 220 - -
Vium6050g00001 282 SUPERFAMILY Homeodomain-like 206 280 IPR009057 -
Vium6050g00001 282 MobiDBLite consensus disorder prediction 1 66 - -
Vium6050g00001 282 Coils Coil 1 23 - -
Vium6050g00001 282 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Vium6050g00001 282 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6050g00001 Vium-Chr6050 7 1056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6050g00001 17 278 ZF-HD Transcription Factor Family AT4G24660 49.057 1.23e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium6050g00001 ZF-HD_dimer 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6050g00001 - - pvu:PHAVU_009G037900g 474.167