Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6043g00023 ATGGCTTCAACGGACGTCAGAGGAATTTTGACAGCTTTCAATCCTTCTCTGGACTTCTTCGCTATAACTGCCGGAGACGGTCGCGTCAAGATATGGGACACGCTGAGTGGCCAGGTCCAGACCGAGTTCGCAGATATTGCATCAACTCATTCAACAACTACGCCACAGAACAAATCCATTAACGGCCATCTTGCACTAGATTATACCTGCATCAAGTGGTTCTCCTTCGAAAGAAAGAGGAAACGGAAGCATGCATCCTCGTTGTTAGTACTTGGAACTGGTAGTGGTGATGTTCTAGCACTTGATGTTGATGCTGGTCATTTAAGTTGGAGAATTACTGACTGTCATCCCGGAGGTGTGAGAGCCATTGCATCTTCAGCAAACGTGTCAAGCATTTATACAGCTGGTGCAGATGGGATGGTATGTGCGATAGATTTTATGACAGGAAACCTGTTGGAGAAATTTAAGGCTTCTACCAAGGCGGTGTCCTGCATGTGTGTTTCTCCAGATGGGAAGACATTAGCTACTGCAGCTGCACAATTGAAGATTTTTAACTGCTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGTTCTGTTCGATGCATGGTTTTCACTGAAGATGGCAAGTATATCCTCTCGTCCGCAGTTGGTGAAAGATATGTTGCTGTTTGGAGGATAGATGGTCCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCATCCGGCTGTCTTTCTTGATAGCAGGTGCATTGATATTGTGGGGGATGACATGCCTGGCATATGTGTTTTGGCCATTTCAGAAGTTGGCATTTGTTATTTATGGTTTGGTAATAGTATTGAAGAACTGCGTAATGCAAAAGCCACAAAAATATCATTATCTTTAGAAGACATGCCCTCCAGAAATTACAGAGGAACTCTGCCAGCAATATATGCGGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAGCCATCATTCAGAAAAGTTCTTGTGCATTCTGGTACAGACGTAAAGTTGAATGTCTCTCGCGATGGTGTTCTTCTACCAACAAGTCAAGCTCTCGTCAAATCTAAGAAGGGAACAAATGCACAAACAGTTACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGATTTTTAATTCCCAAGAGAACGAGAAAGAGAAAGCATTTCAAAAACCTTTGGACAAGGATATAATTGATGATTTGTGGAGAAATGATGAGTCTGTTGAAATGGAAGATGATATGGCCCATAGTGAGGCTGATGAACTTTGCATGGAGGACCTGCTAAAATCACTAGGGATGCTTTCCGGTGAAAGTGAATATGCATCAAACATTGAACTTTGCTCTAAGTTGTTGAAGGGTATTGATGTCGATGCTACTGTTCCAGTGAAAAAGATAAGAGCAACTGTTTTGTCTATGGAGCCAAGCAAAGCATTCATGCTACTGGAAGCGTTACTGGCTGCATGGGAATCAAGGTCATCTAGTGGAAAGTACATTCTTCCATGGATATACAGCATATTAGTGAATCATGCTCAAAATGTCATTGCTGAGGAATCTGATACACGTACGCTTGATACCTTAGACAAGATTAGCAATTTTAGAGGGGCAGCTCTTCAGCCTTTGTTACAATTATCAGGTCGTCTCCAACTGGTGACATCACAGATTGACAAAGCCTCCCAGACGATAAGCCATTCGGTGCATGAACTCCAAACAGAAGAAAGTGAAGATGAAGATGAAGATGAAACTAAGGATGAATATTATCACGAGGGAGATGATACTTCTGAAATAAGTACTGATGATGAAAGCTAG 1875 0.424 MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLSGQVQTEFADIASTHSTTTPQNKSINGHLALDYTCIKWFSFERKRKRKHASSLLVLGTGSGDVLALDVDAGHLSWRITDCHPGGVRAIASSANVSSIYTAGADGMVCAIDFMTGNLLEKFKASTKAVSCMCVSPDGKTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKYILSSAVGERYVAVWRIDGPKKQSASCVLAMEHPAVFLDSRCIDIVGDDMPGICVLAISEVGICYLWFGNSIEELRNAKATKISLSLEDMPSRNYRGTLPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKVLVHSGTDVKLNVSRDGVLLPTSQALVKSKKGTNAQTVTALDRANAEDALLPIPKIFNSQENEKEKAFQKPLDKDIIDDLWRNDESVEMEDDMAHSEADELCMEDLLKSLGMLSGESEYASNIELCSKLLKGIDVDATVPVKKIRATVLSMEPSKAFMLLEALLAAWESRSSSGKYILPWIYSILVNHAQNVIAEESDTRTLDTLDKISNFRGAALQPLLQLSGRLQLVTSQIDKASQTISHSVHELQTEESEDEDEDETKDEYYHEGDDTSEISTDDES 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6043g00023 624 MobiDBLite consensus disorder prediction 594 608 - -
Vium6043g00023 624 PANTHER OS03G0300300 PROTEIN 4 623 - -
Vium6043g00023 624 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 233 IPR011047 -
Vium6043g00023 624 Gene3D - 5 143 IPR015943 GO:0005515
Vium6043g00023 624 Gene3D - 144 252 IPR015943 GO:0005515
Vium6043g00023 624 Pfam Dip2/Utp12 Family 481 574 IPR007148 -
Vium6043g00023 624 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Vium6043g00023 624 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Vium6043g00023 624 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Vium6043g00023 624 SMART WD40_4 148 185 IPR001680 GO:0005515
Vium6043g00023 624 SMART WD40_4 188 228 IPR001680 GO:0005515
Vium6043g00023 624 SMART WD40_4 3 33 IPR001680 GO:0005515
Vium6043g00023 624 SMART WD40_4 105 145 IPR001680 GO:0005515
Vium6043g00023 624 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 237 IPR001680 GO:0005515
Vium6043g00023 624 MobiDBLite consensus disorder prediction 584 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6043g00023 Vium-Chr6043 167707 174671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6043g00023 116 227 U-box Gene Family AT2G33340 29.310 2.91e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6043g00023 K14546 - gmx:100784148 996.112