Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6043g00011 ATGTTGTTGTTGCTGTTATTATTATTATTATTGTTGTGGTGGTGCTACTGTTCTGTTAGGTTCGGTTTGGATCTCCGAAGCATGAATCTGGGCAACGGAAAGGGATCCATGTCAACGGTTACTACAACAGGGGTTATGAAATCCGGAGACGTTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGACGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTTCGCACGTGCCTCTACGAAGTTACCAAATGCAACCGAGCAGAGACTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGATGGATTTAAACTTCTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTATCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGACGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCGGCTAACGAAGGCAGTTGGAGAAACTCAAAAAAGAGAAGGGACGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAACCTCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGATTAAGTGGAGTTTCTCAACACCAGAATAATATGAACAACTCCTTTCTCGGCTCTCAAGAGGCAACGTTTGGAACAATTTCTTCAATTAGCGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCTGCTCAAAGTCTGGCTACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCCAAAGCTGGTGTACCAATGCCTATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGCAGTAAACCAATGAACTTATTGCTTGGAATCCCTACCAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCAGCTTGAATATGCGAGTCAATGCATCTGCCCCACAAGGCAACCCCTTATTGATGCAGATGCCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATCCTGGTCCTCGTGTTCCTAGGCTTCCATCATCTTTGGGGCAGCCTAATGTATCAAATGGAATTTCTAATGGCTTTCTGGGAAGAAATGGCATTGCTGGTAATAACAGAGGACCTGCGTATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGCTCTGAAATGTCCGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATGTACAGTATCACAACAAAAGGCTCATTTCAGGAGGAAGTTACATCTGGAATTAAAACATCTGGTGGATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAGTGCCCCCCATCATGCAAATCCTTTACAAGGTAACATTGATGTATCCCCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACCCAGCAGACCGGCCAGAGCAGAGATGCTACTTTAATTGGAAAATCTATGTTCTCCGTGGGACAAGGCTCGGAGCAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCGCTTCTTGTTGACAATTCAGTAAGGGTTAAGTCTGAAAGAATTCCCGATGCAAGTTCCCAGACTAATCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCGCTTCTAAAGCAGCAAGAAGGCATGGGACCAGCTGAGAGTGAGTTTGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2121 0.4517 MLLLLLLLLLLLWWCYCSVRFGLDLRSMNLGNGKGSMSTVTTTGVMKSGDVVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLGSQEATFGTISSISGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPIMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIASLNMRVNASAPQGNPLLMQMPQSQPRGQMLSENPGPRVPRLPSSLGQPNVSNGISNGFLGRNGIAGNNRGPAYNPVPPNSSLLSFPMNQSSEMSVNNSLPLGSTPGMYSITTKGSFQEEVTSGIKTSGGFPSYDIFNELHHHKSHDWEITNPGLTYSAPHHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRDATLIGKSMFSVGQGSEQDNLQNAVQHLHPLLVDNSVRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPAESEFEFDAYSLDNIPV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6043g00011 706 PIRSF RR_ARR_type-B 36 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium6043g00011 706 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
Vium6043g00011 706 MobiDBLite consensus disorder prediction 182 203 - -
Vium6043g00011 706 Pfam Response regulator receiver domain 62 170 IPR001789 GO:0000160
Vium6043g00011 706 Gene3D - 237 299 - -
Vium6043g00011 706 SMART REC_2 60 172 IPR001789 GO:0000160
Vium6043g00011 706 Gene3D - 60 195 - -
Vium6043g00011 706 ProSiteProfiles Response regulatory domain profile. 61 176 IPR001789 GO:0000160
Vium6043g00011 706 FunFam Two-component response regulator 60 197 - -
Vium6043g00011 706 FunFam Two-component response regulator 236 299 - -
Vium6043g00011 706 Pfam Myb-like DNA-binding domain 242 292 IPR001005 -
Vium6043g00011 706 MobiDBLite consensus disorder prediction 216 237 - -
Vium6043g00011 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 296 IPR017930 -
Vium6043g00011 706 CDD REC_typeB_ARR-like 62 176 - -
Vium6043g00011 706 NCBIfam myb-like DNA-binding domain, SHAQKYF class 240 293 IPR006447 GO:0003677
Vium6043g00011 706 SUPERFAMILY CheY-like 59 182 IPR011006 -
Vium6043g00011 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 60 374 IPR045279 GO:0009736
Vium6043g00011 706 MobiDBLite consensus disorder prediction 182 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6043g00011 Vium-Chr6043 94746 98848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6043g00011 95 706 Response Regulator Gene Family AT3G16857 51.613 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium6043g00011 Response_reg 6.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6043g00011 - K14491 gmx:100814930 1229.54