Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6043g00007 ATGGTGGATCCAGCTGGAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGCGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCGCTGTCTTATGGATCCGTTTATGCCTGA 408 0.5735 MVDPAGKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6043g00007 135 CDD ZnF_GATA 34 69 IPR000679 GO:0006355|GO:0043565
Vium6043g00007 135 MobiDBLite consensus disorder prediction 13 38 - -
Vium6043g00007 135 SMART GATA_3 29 82 IPR000679 GO:0006355|GO:0043565
Vium6043g00007 135 PANTHER OS01G0976800 PROTEIN 14 135 - -
Vium6043g00007 135 ProSitePatterns GATA-type zinc finger domain. 35 60 IPR000679 GO:0006355|GO:0043565
Vium6043g00007 135 MobiDBLite consensus disorder prediction 1 49 - -
Vium6043g00007 135 Gene3D - 29 90 IPR013088 GO:0006355|GO:0008270
Vium6043g00007 135 Pfam GATA zinc finger 35 69 IPR000679 GO:0006355|GO:0043565
Vium6043g00007 135 ProSiteProfiles GATA-type zinc finger domain profile. 29 65 IPR000679 GO:0006355|GO:0043565
Vium6043g00007 135 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6043g00007 Vium-Chr6043 76216 77275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6043g00007 26 135 C2C2-Gata Transcription Factor Family AT5G49300 55.932 6.48e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium6043g00007 GATA 5.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6043g00007 - - pvu:PHAVU_003G110400g 228.794