Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6043g00006 ATGTCTCTAAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTTGCAGTTGATGCTGATGAGGGTCGTCGGCGAAGAGAGGATAACATGGTCGAGATCCGAAAGAGCAAGCGCGAGGAGAGCTTGCAGAAGAAGCGTCGCGAAGGTCTCCAAGCTCAGCAACAGTTTGCCACTCCTGTTCAGGCTTCCACTGTCGACAAGAAGTTAGAGAGTCTTCCTGCGATGGTTGCTGGAGTTTGGTCGGATGATAATACTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTTCTTTCAATTGAGCGGAGCCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTTCCGCGTTTTGTTGAGTTTCTTGTCAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCGCTTACAAACATTGCATCTGGGACTTCTGAGAATACTAAGGTGGTCATTGATCATGGGGCAGTTCCCATATTTGTCAAGCTGCTTAGTTCGCCTAGCGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGCGCCCTCGTCCCACTATTGGCTCAGTTGAATGAACATGCAAAACTCTCAATGCTAAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAGCAGGTGAGACCAGCGCTTCCAGCACTTGAGCGCTTGATCTTCTCCAATGATGAAGAAGTCTTGACAGATGCTTGCTGGGCATTATCATATCTTTCTGATGGCACAAATGACAAGATTCAAGCAGTTATTGAAGCAGGTGTATGTCCCAGATTGGTGCAGCTGCTCTTGAACCAATCTCCCTCGGTTCTGATTCCTGCCCTTCGTACTGTCGGAAATATTGTGACTGGAGATGACATGCAAACTCAGTCTATTATCAATCATGGTGCGCTCCCTTGCCTTTTGAGCCTGTTGAGTCATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAGATACAGGCTGTTATTGAAGCTGGTCTGGTTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCCTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATTAAGTACTTGGTTGGTCAGGGTTGTATAAAGCCTCTTTGTGATCTTCTTGTTTGTCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTGGGAGAAGCCGAGAAGAGCCTTGGCAACACTGGAGATGTCAACTTGTATGCACAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATCTATGAAAAGGCCGTTAAACTTCTTGAAACATACTGGTTGGAAGATGAGGACGAGACCCTACCTCCAGGAGACGGTGCTCAACCTGGTTTTGGTTTTGGAAATGAGCTCCCAGTCCCGTCTGGTGGATTCAACTTCAGCTGA 1590 0.4698 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPVQASTVDKKLESLPAMVAGVWSDDNTLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLIFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLNQSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPCLLSLLSHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEDEDETLPPGDGAQPGFGFGNELPVPSGGFNFS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6043g00006 529 PANTHER IMPORTIN ALPHA 12 499 - -
Vium6043g00006 529 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Vium6043g00006 529 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Vium6043g00006 529 MobiDBLite consensus disorder prediction 505 529 - -
Vium6043g00006 529 Gene3D - 11 50 IPR036975 GO:0006606
Vium6043g00006 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Vium6043g00006 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vium6043g00006 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Vium6043g00006 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vium6043g00006 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Vium6043g00006 529 FunFam Importin subunit alpha 73 496 - -
Vium6043g00006 529 Gene3D - 73 496 IPR011989 -
Vium6043g00006 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 189 231 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 316 357 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 148 188 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 233 272 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 274 314 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 105 146 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 359 399 IPR000225 GO:0005515
Vium6043g00006 529 SMART arm_5 402 442 IPR000225 GO:0005515
Vium6043g00006 529 Pfam Atypical Arm repeat 457 503 IPR032413 -
Vium6043g00006 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Vium6043g00006 529 MobiDBLite consensus disorder prediction 38 58 - -
Vium6043g00006 529 FunFam Importin subunit alpha 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6043g00006 Vium-Chr6043 66444 70740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6043g00006 131 391 U-box Gene Family AT3G46510 24.809 2.39e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6043g00006 K15042 - gmx:100808498 999.579