Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6043g00003 ATGAAGCTGTTTGGTTTCTCCTTGAACTTGAAGGCTGCCATAGCCGGTGAAGATGGTGCAAAGAGGTTCCACTGCCGATACTGTCGCCGCCAGTTCACAAATTCTCAAGCACTTGGAGGGCACCAAAATGCGCACAGGAGGGAACGTGCTAAGCTAGCCCAGTTCAAATACCTTCTCAATCTTCGACAACAACATGGCCATAGGTTTAAAGCACCATACAACAACGGACCAAAAGGGTGTTTGGTTCCTCATCCAAATAGCTCACCCAACGTTAGTGTTGGTAGTGCAACTAGTGCAGCTTTGTTTCAATTTCATGGTGCAGGCACACTGCTCCAGCAAGTTCCAGCGCGTGACCATGACGTGGATGTGGATCTCAACCTCAGACTCTAG 390 0.4897 MKLFGFSLNLKAAIAGEDGAKRFHCRYCRRQFTNSQALGGHQNAHRRERAKLAQFKYLLNLRQQHGHRFKAPYNNGPKGCLVPHPNSSPNVSVGSATSAALFQFHGAGTLLQQVPARDHDVDVDLNLRL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6043g00003 129 Gene3D Classic Zinc Finger 9 74 - -
Vium6043g00003 129 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
Vium6043g00003 129 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 82 IPR044246 GO:0009788
Vium6043g00003 129 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Vium6043g00003 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6043g00003 Vium-Chr6043 40958 41427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6043g00003 13 55 C2H2 Transcription Factor Family AT5G06650 55.814 9.52e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6043g00003 - - vra:106766530 253.062